RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 BGLAPP02818 100 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 POLR2IP36954 125 aaKnown RBP3.02□□□□□ -1.93
HMGB1-204ENST00000399489 MARCKSL1P49006 195 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 SLC25A1P53007 311 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 EMP1P54849 157 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 GNG5P63218 68 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 KIF1AQ12756 1690 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PAFAH1B3Q15102 231 aaKnown RBP3.02□□□□□ -1.93
HMGB1-204ENST00000399489 OR8B8Q15620 311 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 FBXL19-AS1Q494R0 122 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ARL9Q6T311 187 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 MOB1BQ7L9L4 216 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PRNTQ86SH4 94 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 OOSP2Q86WS3 158 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 TGIF2LYQ8IUE0 185 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 BAP18Q8IXM2 172 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 DRAM1Q8N682 238 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 GDPD1Q8N9F7 314 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF675Q8TD23 568 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 DCUN1D4Q92564 292 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ARL11Q969Q4 196 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 APOBEC3DQ96AK3 386 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF501Q96CX3 271 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-204ENST00000399489 FXYD5Q96DB9 178 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 NEURL3Q96EH8 262 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 REEP6Q96HR9 211 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 PGLYRP2Q96PD5 576 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 OR2A7Q96R45 310 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 LINC01587Q99440 93 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 DOHHQ9BU89 302 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 SH3BGRL3Q9H299 93 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ACER3Q9NUN7 267 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 C14orf105Q9NVL8 296 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 MARCH5Q9NX47 278 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF230Q9UIE0 474 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-204ENST00000399489 SSR3Q9UNL2 185 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 NEUROG3Q9Y4Z2 214 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 ENPP4Q9Y6X5 453 aa3.02□□□□□ -1.93
HMGB1-204ENST00000399489 CHD5Q8TDI0 1954 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 COL14A1Q05707 1796 aaKnown RBP3.01□□□□□ -1.93
HMGB1-204ENST00000399489 SSH2Q76I76 1423 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 NFASCO94856 1347 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 A0A0X1KG70 313 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 LOC389332A0A1B0GUA5 103 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 WI2-2373I1.2A0A1W2PRP0 233 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 EPM2AB3EWF7 344 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 J3KT08 172 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 GNG7O60262 68 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 TNFSF13O75888 250 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 IL1RNP18510 177 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 CDK2P24941 298 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 GFERP55789 205 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 RPL23P62829 140 aaKnown RBP3.01□□□□□ -1.93
HMGB1-204ENST00000399489 RPS24P62847 133 aaKnown RBP3.01□□□□□ -1.93
HMGB1-204ENST00000399489 SELENOWP63302 87 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 ADIGQ0VDE8 80 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 PRDX4Q13162 271 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF343Q6P1L6 599 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 SCGB1D4Q6XE38 83 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 Q6ZRU5 148 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 CLEC20AQ6ZU45 233 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 GOLT1AQ6ZVE7 132 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 DEFB128Q7Z7B8 93 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 PDZD9Q8IXQ8 264 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 C8orf59Q8N0T1 100 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-204ENST00000399489 OR4E2Q8NGC2 313 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 OR2T4Q8NH00 348 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 GPR119Q8TDV5 335 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 FAM151AQ8WW52 585 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 ROPN1LQ96C74 230 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 MRPL20Q9BYC9 149 aaKnown RBP3.01□□□□□ -1.93
HMGB1-204ENST00000399489 RNASE7Q9H1E1 156 aaKnown RBP3.01□□□□□ -1.93
HMGB1-204ENST00000399489 OR51I2Q9H344 312 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 PTGES2Q9H7Z7 377 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 HES4Q9HCC6 221 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 MMP26Q9NRE1 261 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 BRCA1P38398 1863 aaKnown RBP3.01□□□□□ -1.93
HMGB1-204ENST00000399489 RGPD3A6NKT7 1758 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-204ENST00000399489 RGPD4Q7Z3J3 1758 aa3.01□□□□□ -1.93
HMGB1-204ENST00000399489 CHD4Q14839 1912 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 IGHV3OR16-10A0A075B7F0 116 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 CCL15-CCL14A0A0B4J2E2 113 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 A0A1B0GX51 115 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 EPOPA6NHQ4 379 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 M0R143 59 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 DNASE2O00115 360 aaPredicted RBP3□□□□□ -1.93
HMGB1-204ENST00000399489 IGHV3-23P01764 117 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 HBZP02008 142 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 TDGF1P13385 188 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 ZBTB25P24278 435 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 TDGF1P3P51864 188 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 RPS28P62857 69 aaKnown RBP3□□□□□ -1.93
HMGB1-204ENST00000399489 MEF2CQ06413 473 aaPredicted RBP3□□□□□ -1.93
HMGB1-204ENST00000399489 ERCC8Q13216 396 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 EBPQ15125 230 aaKnown RBP3□□□□□ -1.93
HMGB1-204ENST00000399489 BATFQ16520 125 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 CCL15Q16663 113 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 TCEAL5Q5H9L2 206 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 CLLU1OSQ5K130 101 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 FAM201AQ5SY85 155 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms