RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 ADARB2-AS1A8MUL3 147 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 ZNF701M0R085 212 aaPredicted RBP10.51□□□□□ -0.73
VPS28-202ENST00000377348 SHOXO15266 292 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 ATP6V0E1O15342 81 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 TNFSF8P32971 234 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 TAGLNQ01995 201 aaKnown RBP10.51□□□□□ -0.73
VPS28-202ENST00000377348 CBX3Q13185 183 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 C2orf68Q2NKX9 166 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 LCNL1Q6ZST4 164 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 OR4X2Q8NGF9 303 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 TCTEX1D2Q8WW35 142 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 HSD17B10Q99714 261 aaKnown RBP10.51□□□□□ -0.73
VPS28-202ENST00000377348 TINAGL1Q9GZM7 467 aaPredicted RBP10.51□□□□□ -0.73
VPS28-202ENST00000377348 OR51J1Q9H342 316 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 MTFP1Q9UDX5 166 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 FBXO7Q9Y3I1 522 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 WSB1Q9Y6I7 421 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 PLXNB1O43157 2135 aa10.51□□□□□ -0.73
VPS28-202ENST00000377348 TCRBV4S1A1TA0A5B7 111 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 G3V318 75 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 TPPPO94811 219 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 SPDEFO95238 335 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 CA2P00918 260 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 CD3DP04234 171 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 CSF1P09603 554 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 RRASP10301 218 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 BRWD1-AS2P59051 145 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 TSPAN5P62079 268 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 CX3CL1P78423 397 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 KHDC1LQ5JSQ8 128 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 FOXB2Q5VYV0 432 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 PYHIN1Q6K0P9 492 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 NDUFA11Q86Y39 141 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 OR6F1Q8NGZ6 308 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 FAM110DQ8TAY7 271 aaPredicted RBP10.5□□□□□ -0.73
VPS28-202ENST00000377348 C15orf40Q8WUR7 153 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 FCAMRQ8WWV6 532 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 MOB3AQ96BX8 217 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 FAM103A1Q9BTL3 118 aaKnown RBP10.5□□□□□ -0.73
VPS28-202ENST00000377348 PRELID3BQ9Y3B1 194 aa10.5□□□□□ -0.73
VPS28-202ENST00000377348 DPPA5A6NC42 116 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 GABARAPH6UMI1 98 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 IGF1P05019 195 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 CRYGBP07316 175 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 VDAC1P21796 283 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 GNRHRP30968 328 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 LGALS7P47929 136 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 SLC35B1P78383 322 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 CFHR3Q02985 330 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 PJVKQ0ZLH3 352 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 MSMO1Q15800 293 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 VAX1Q5SQQ9 334 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 TREML4Q6UXN2 200 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 ZNF66Q6ZN08 573 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 IDO2Q6ZQW0 420 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 C18orf65Q6ZTR6 163 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 OR4D10Q8NGI6 311 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 ABHD5Q8WTS1 349 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 SMIM4Q8WVI0 70 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 SOSTQ9BQB4 213 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 A3GALT2U3KPV4 340 aa10.49□□□□□ -0.73
VPS28-202ENST00000377348 FABP12A6NFH5 140 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 ARPC1BO15143 372 aaKnown RBP10.48□□□□□ -0.73
VPS28-202ENST00000377348 RAMP3O60896 148 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 EGR2P11161 476 aaPredicted RBP10.48□□□□□ -0.73
VPS28-202ENST00000377348 GNB1P62873 340 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 SSBP2P81877 361 aaPredicted RBP10.48□□□□□ -0.73
VPS28-202ENST00000377348 MRPS10P82664 201 aaKnown RBP10.48□□□□□ -0.73
VPS28-202ENST00000377348 ECSCRQ19T08 205 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 MRGPRG-AS1Q2M3A8 158 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 ACTBL2Q562R1 376 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 RNASE10Q5GAN6 216 aaKnown RBP10.48□□□□□ -0.73
VPS28-202ENST00000377348 AADACL3Q5VUY0 350 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 PPP1R27Q86WC6 154 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 VKORC1L1Q8N0U8 176 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 ZBTB34Q8NCN2 500 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 OR51H1Q8NH63 302 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 OSR1Q8TAX0 266 aaPredicted RBP10.48□□□□□ -0.73
VPS28-202ENST00000377348 MMP27Q9H306 513 aa10.48□□□□□ -0.73
VPS28-202ENST00000377348 TSSC4Q9Y5U2 329 aaPredicted RBP10.48□□□□□ -0.73
VPS28-202ENST00000377348 TRAV41A0A0B4J266 112 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 CTDSPLO15194 276 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 OPN1MWP04001 364 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 CD74P04233 296 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 RLN1P04808 185 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 RPLP1P05386 114 aaKnown RBP10.47□□□□□ -0.73
VPS28-202ENST00000377348 SAA1P0DJI8 122 aaPredicted RBP10.47□□□□□ -0.73
VPS28-202ENST00000377348 OPN1MW2P0DN77 364 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 OPN1MW3P0DN78 364 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 PPIFP30405 207 aaKnown RBP10.47□□□□□ -0.73
VPS28-202ENST00000377348 UBE2KP61086 200 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 FXYD3Q14802 87 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 VMA21Q3ZAQ7 101 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 FAAP20Q6NZ36 180 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 TEX38Q6PEX7 206 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 SPAG16Q8N0X2 631 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 TMEM229BQ8NBD8 167 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 OR4S2Q8NH73 311 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 GRPEL2Q8TAA5 225 aa10.47□□□□□ -0.73
VPS28-202ENST00000377348 R3HDM4Q96D70 268 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms