RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 RASSF6Q6ZTQ3 369 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 SPATA12Q7Z6I5 190 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 TMEM161BQ8NDZ6 487 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 OR4X1Q8NH49 305 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 C12orf43Q96C57 262 aaKnown RBP0.85□□□□□ -2.27
VPS13A-206ENST00000376646 DNAJC30Q96LL9 226 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 NMNAT3Q96T66 252 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 TXNDC17Q9BRA2 123 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 TTTY12Q9BZ98 90 aa0.85□□□□□ -2.27
VPS13A-206ENST00000376646 NOSIPQ9Y314 301 aaKnown RBP0.85□□□□□ -2.27
VPS13A-206ENST00000376646 POLR3HQ9Y535 204 aaPredicted RBP0.85□□□□□ -2.27
VPS13A-206ENST00000376646 ABCC11Q96J66 1382 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 TEP1Q99973 2627 aaKnown RBP0.84□□□□□ -2.27
VPS13A-206ENST00000376646 MUC21A0A0G2JKD1 596 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 MUC21A0A140T8X8 626 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 OR6C6A6NF89 314 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 TMEM235A6NFC5 223 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 GNRH2O43555 120 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 RPS12P25398 132 aaKnown RBP0.84□□□□□ -2.27
VPS13A-206ENST00000376646 HINT1P49773 126 aaPredicted RBP0.84□□□□□ -2.27
VPS13A-206ENST00000376646 ZNF140P52738 457 aaPredicted RBP0.84□□□□□ -2.27
VPS13A-206ENST00000376646 TAS2R30P59541 319 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 HSP90B2PQ58FF3 399 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 OGFRL1Q5TC84 451 aaPredicted RBP0.84□□□□□ -2.27
VPS13A-206ENST00000376646 LRRN1Q6UXK5 716 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 SLC35F6Q8N357 371 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 RNASE11Q8TAA1 199 aaKnown RBP0.84□□□□□ -2.27
VPS13A-206ENST00000376646 PIGXQ8TBF5 258 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 RAB2BQ8WUD1 216 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 TESCQ96BS2 214 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 SFRP2Q96HF1 295 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 TTTY13Q9BZ97 58 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 HES4Q9HCC6 221 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 HRASLSQ9HDD0 168 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 TMEM106BQ9NUM4 274 aa0.84□□□□□ -2.27
VPS13A-206ENST00000376646 SLX4Q8IY92 1834 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 COL4A2P08572 1712 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 KIF15Q9NS87 1388 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 ICE1Q9Y2F5 2266 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 NOTCH1P46531 2555 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 C21orf140B9A014 251 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 LRRN3E7EW58 273 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 SLC16A4O15374 487 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 IL3P08700 152 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 XCL1P47992 114 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 REG1BP48304 166 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 TBPL1P62380 186 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 GNA12Q03113 381 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 UAP1Q16222 522 aaPredicted RBP0.84□□□□□ -2.28
VPS13A-206ENST00000376646 LGALS9BQ3B8N2 356 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 C1orf195Q5TG92 126 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 AGTRAPQ6RW13 159 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 SBSNQ6UWP8 590 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 Q8NDZ9 215 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 OR2T27Q8NH04 317 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 RAB8BQ92930 207 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 SLC35G5Q96KT7 338 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 ZNF471Q9BX82 626 aaPredicted RBP0.84□□□□□ -2.28
VPS13A-206ENST00000376646 ANAPC10Q9UM13 185 aa0.84□□□□□ -2.28
VPS13A-206ENST00000376646 SAMHD1Q9Y3Z3 626 aaKnown RBP0.84□□□□□ -2.28
VPS13A-206ENST00000376646 MPDZO75970 2070 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 REREQ9P2R6 1566 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 CHD8Q9HCK8 2581 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 A0A0G2JQZ4 141 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 A0A1W2PQD3 144 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 LY6LH3BQJ8 138 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 OVOL1O14753 267 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 BPGMP07738 259 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 ZNF728P0DKX0 622 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 DDTP30046 118 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 RPL27AP46776 148 aaKnown RBP0.83□□□□□ -2.28
VPS13A-206ENST00000376646 GABRA2P47869 451 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 DEFB103AP81534 67 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 C1orf194Q5T5A4 169 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 FAM78BQ5VT40 261 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 OR10K2Q6IF99 312 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 Q6ZS52 159 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 HIST2H3AQ71DI3 136 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 GPHB5Q86YW7 130 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 OR4X2Q8NGF9 303 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 OR13C8Q8NGS7 320 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 CLDND2Q8NHS1 167 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 CCL13Q99616 98 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 CXCL16Q9H2A7 254 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 CXorf21Q9HAI6 301 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 COQ4Q9Y3A0 265 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 VWDEQ8N2E2 1590 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 EVC2Q86UK5 1308 aa0.83□□□□□ -2.28
VPS13A-206ENST00000376646 WDR90Q96KV7 1748 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 DICER1Q9UPY3 1922 aaKnown RBP0.82□□□□□ -2.28
VPS13A-206ENST00000376646 A0A087WUU8 490 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 EVPLLA8MZ36 301 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 C2orf74A8MZ97 194 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 C9JCJ5 164 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 H3BRN7 92 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 TXNDC9O14530 226 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 COX7A2LO14548 114 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 NDUFB2O95178 105 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 APOMO95445 188 aa0.82□□□□□ -2.28
VPS13A-206ENST00000376646 PEBP1P30086 187 aaKnown RBP0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms