RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 ACSF3Q4G176 576 aaPredicted RBP10.11□□□□□ -0.79
VPS13A-205ENST00000376636 FOXQ1Q9C009 403 aa10.11□□□□□ -0.79
VPS13A-205ENST00000376636 DDX60LQ5H9U9 1706 aaKnown RBP10.11□□□□□ -0.79
VPS13A-205ENST00000376636 SCN7AQ01118 1682 aa10.11□□□□□ -0.79
VPS13A-205ENST00000376636 PRRT4C9JH25 899 aa10.11□□□□□ -0.79
VPS13A-205ENST00000376636 NXT2Q9NPJ8 142 aaKnown RBP10.11□□□□□ -0.79
VPS13A-205ENST00000376636 GPBAR1Q8TDU6 330 aa10.11□□□□□ -0.79
VPS13A-205ENST00000376636 HOXA3O43365 443 aaPredicted RBP10.1□□□□□ -0.79
VPS13A-205ENST00000376636 TDHQ8IZJ6 230 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 GCM2O75603 506 aaPredicted RBP10.1□□□□□ -0.79
VPS13A-205ENST00000376636 VENTXO95231 258 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 IGLV3-27P01718 113 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 HMGA2P52926 109 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 SPTY2D1-AS1A0A0U1RR47 76 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 CADM4Q8NFZ8 388 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 PNLIPP16233 465 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 LHX8Q68G74 356 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 A0A0U1RQV5 110 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 PRF1P14222 555 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 MARS2Q96GW9 593 aaKnown RBP10.1□□□□□ -0.79
VPS13A-205ENST00000376636 CYSLTR1Q9Y271 337 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 KBTBD11-OT1A0A1B0GTJ5 212 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 PQLC2LA1A4F0 135 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 CEACAM5P06731 702 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 COL10A1Q03692 680 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 LINC00518Q8N0U6 118 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 KLK2P20151 261 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 EAF1Q96JC9 268 aaPredicted RBP10.1□□□□□ -0.79
VPS13A-205ENST00000376636 SCGB3A1Q96QR1 104 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 TMEM106BQ9NUM4 274 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 TBL2Q9Y4P3 447 aaKnown RBP10.1□□□□□ -0.79
VPS13A-205ENST00000376636 A0A1W2PQD3 144 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 PGPEP1LA6NFU8 196 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 CD1AP06126 327 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 ATP5IP56385 69 aaPredicted RBP10.1□□□□□ -0.79
VPS13A-205ENST00000376636 GCSAMQ8N6F7 178 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 TAF15Q92804 592 aaKnown RBP eCLIP10.1□□□□□ -0.79
VPS13A-205ENST00000376636 HIST1H2BAQ96A08 127 aa10.1□□□□□ -0.79
VPS13A-205ENST00000376636 FXYD1O00168 92 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 WDR81Q562E7 1941 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 ZNF236Q9UL36 1845 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 NCKAP5O14513 1909 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 PGPA6NDG6 321 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 TFPI2P48307 235 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 TMEM171Q8WVE6 324 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 C8orf88P0DMB2 117 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 S100A7L2Q5SY68 101 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.09□□□□□ -0.79
VPS13A-205ENST00000376636 SYNGR3O43761 229 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 LGALS1P09382 135 aaKnown RBP10.09□□□□□ -0.79
VPS13A-205ENST00000376636 ATP5G2Q06055 141 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 FMC1Q96HJ9 113 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 LIPT2A6NK58 231 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 CLDND2Q8NHS1 167 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 PF4V1P10720 104 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 TP53I13Q8NBR0 393 aaPredicted RBP10.09□□□□□ -0.79
VPS13A-205ENST00000376636 SERGEFQ9UGK8 458 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 CCL27Q9Y4X3 112 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 GPX4P36969 197 aaPredicted RBP10.09□□□□□ -0.79
VPS13A-205ENST00000376636 ABCA3Q99758 1704 aa10.09□□□□□ -0.79
VPS13A-205ENST00000376636 TNFSF14O43557 240 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 ISXQ2M1V0 245 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 PHF3Q92576 2039 aaKnown RBP10.08□□□□□ -0.8
VPS13A-205ENST00000376636 TRAV12-3A0A0B4J271 114 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 MARCH11A6NNE9 402 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 FXYD3Q14802 87 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 IGHV4-39P01824 125 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 REG1BP48304 166 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 SPINK14Q6IE38 97 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 TMEM30BQ3MIR4 351 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 ZNF146Q15072 292 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 TINAGQ9UJW2 476 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 TRAV9-1A0A075B6T8 112 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 PPIAL4EA0A075B759 164 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 PPIAL4DF5H284 164 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 CLDN14O95500 239 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 PPIAL4FP0DN26 164 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 TMEM86BQ8N661 226 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 EEF1AKMT3Q96AZ1 226 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 PPIAL4AQ9Y536 164 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 VEGFBP49765 207 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 NDUFA2O43678 99 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 FOXC1Q12948 553 aa10.08□□□□□ -0.8
VPS13A-205ENST00000376636 OPN3Q9H1Y3 402 aaPredicted RBP10.08□□□□□ -0.8
VPS13A-205ENST00000376636 ANK1P16157 1881 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 HMGA1P17096 107 aaKnown RBP10.07□□□□□ -0.8
VPS13A-205ENST00000376636 DNM1P46Q6ZS02 220 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 A0A1B0GTH9 108 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 OR4X2Q8NGF9 303 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 MBD1Q9UIS9 605 aaPredicted RBP10.07□□□□□ -0.8
VPS13A-205ENST00000376636 GRIFINA4D1Z8 144 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 COX11Q9Y6N1 276 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 DOCK3Q8IZD9 2030 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 DLEC1Q9Y238 1755 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 RUNX1Q01196 453 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 PRSS53Q2L4Q9 553 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 APOBEC4Q8WW27 367 aaKnown RBP10.07□□□□□ -0.8
VPS13A-205ENST00000376636 OVOL2Q9BRP0 275 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 C21orf140B9A014 251 aa10.07□□□□□ -0.8
VPS13A-205ENST00000376636 IGHV3OR15-7A0A075B7D8 119 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms