RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 RAX2Q96IS3 184 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 ZDHHC8Q9ULC8 765 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 IGHV3OR16-12A0A075B7B8 117 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 MBD3L1Q8WWY6 194 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 PRDM14Q9GZV8 571 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 PEF1Q9UBV8 284 aaKnown RBP6.35□□□□□ -1.39
SYNE1-208ENST00000367256 AGRNO00468 2067 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 IGKV3D-11A0A0A0MRZ8 115 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 IGKV3-11P04433 115 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 PRSS2P07478 247 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 PNLIPP16233 465 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF600Q6ZNG1 722 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 LINC01555Q8NAE3 123 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 SFRP2Q96HF1 295 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 SFXN3Q9BWM7 321 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 FSCN3Q9NQT6 498 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 CARHSP1Q9Y2V2 147 aaKnown RBP6.35□□□□□ -1.39
SYNE1-208ENST00000367256 TRAV9-1A0A075B6T8 112 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 OR2A4O95047 310 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 GZMMP51124 257 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 LCN2P80188 198 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 OR4D5Q8NGN0 318 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 PGLYRP3Q96LB9 341 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 OR2A7Q96R45 310 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 FAM206AQ9NX38 181 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 COL6A6A6NMZ7 2263 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 IGKV3D-15A0A087WSY6 115 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 IGHV1OR21-1A0A087WYE8 117 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 TRBV5-5A0A0J9YX44 114 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 TNFSF14O43557 240 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 IGKV3-15P01624 115 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 CD8AP01732 235 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 HLA-DRB1P01911 266 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 TFPI2P48307 235 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM30BQ3MIR4 351 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 DPH3Q96FX2 82 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 RBKSQ9H477 322 aa6.35□□□□□ -1.39
SYNE1-208ENST00000367256 TSPAN2O60636 221 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 ARF6P62330 175 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 PRSS27Q9BQR3 290 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 VSIG8P0DPA2 414 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 SPEM2Q0P670 501 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 GPBAR1Q8TDU6 330 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 SMOC1Q9H4F8 434 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 COL24A1Q17RW2 1714 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 DANCRP0C864 163 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF506Q5JVG8 444 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 KLK15Q9H2R5 256 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 SLC17A3O00476 420 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 ISG15P05161 165 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 FAM106CPP0CH98 169 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 TRIP6Q15654 476 aaKnown RBP6.34□□□□□ -1.39
SYNE1-208ENST00000367256 Q6ZS52 159 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 KIR2DL4Q99706 377 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 TRGC2P03986 189 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 FCGR3AP08637 254 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 NXPH1P58417 271 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 CACNG7P62955 275 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 IFITM3Q01628 133 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 C3AR1Q16581 482 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 FOXC2Q99958 501 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 NBASA2RRP1 2371 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 MDKP21741 143 aaPredicted RBP6.34□□□□□ -1.39
SYNE1-208ENST00000367256 LOC390937A0A1W2PQ73 354 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 PTP4A3O75365 173 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 NTN1O95631 604 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 VSIG10L2P0DP72 767 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 TNFSF10P50591 281 aa6.34□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF430Q9H8G1 570 aaPredicted RBP6.34□□□□□ -1.39
SYNE1-208ENST00000367256 LIPFP07098 398 aa6.34□□□□□ -1.4
SYNE1-208ENST00000367256 SRIP30626 198 aa6.34□□□□□ -1.4
SYNE1-208ENST00000367256 SUMO2P61956 95 aaKnown RBP6.34□□□□□ -1.4
SYNE1-208ENST00000367256 RUNX1Q01196 453 aa6.34□□□□□ -1.4
SYNE1-208ENST00000367256 FAM169BQ8N8A8 192 aa6.34□□□□□ -1.4
SYNE1-208ENST00000367256 OR2Y1Q8NGV0 311 aa6.34□□□□□ -1.4
SYNE1-208ENST00000367256 DMRTA2Q96SC8 542 aa6.34□□□□□ -1.4
SYNE1-208ENST00000367256 IGKV3OR2-268A0A0C4DH90 116 aa6.34□□□□□ -1.4
SYNE1-208ENST00000367256 EIF3GO75821 320 aaKnown RBP eCLIP6.34□□□□□ -1.4
SYNE1-208ENST00000367256 RPL8P62917 257 aaKnown RBP6.34□□□□□ -1.4
SYNE1-208ENST00000367256 CX3CL1P78423 397 aa6.34□□□□□ -1.4
SYNE1-208ENST00000367256 DEFB124Q8NES8 71 aa6.34□□□□□ -1.4
SYNE1-208ENST00000367256 CBLN4Q9NTU7 201 aa6.34□□□□□ -1.4
SYNE1-208ENST00000367256 LINC00869P0C866 280 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 EPHA8P29322 1005 aaPredicted RBP6.33□□□□□ -1.4
SYNE1-208ENST00000367256 CA7P43166 264 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 C1orf100Q5SVJ3 147 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 CBLN3Q6UW01 205 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 VN1R4Q7Z5H5 301 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 STPG3Q8N7X2 389 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 TMEM190Q8WZ59 177 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 QTRT1Q9BXR0 403 aaKnown RBP6.33□□□□□ -1.4
SYNE1-208ENST00000367256 LHX9Q9NQ69 397 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 CFDP00746 253 aaPredicted RBP6.33□□□□□ -1.4
SYNE1-208ENST00000367256 GAB4Q2WGN9 574 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 C16orf47Q6ZP98 133 aaPredicted RBP6.33□□□□□ -1.4
SYNE1-208ENST00000367256 C2orf88Q9BSF0 95 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 SERGEFQ9UGK8 458 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 A0A087WWC5 75 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 PLAUP00749 431 aa6.33□□□□□ -1.4
SYNE1-208ENST00000367256 GPX1P07203 203 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms