RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZNF502Q8TBZ5 544 aa16.76■□□□□ 0.27
CCDC88B-202ENST00000356786 ZCCHC14Q8WYQ9 949 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-202ENST00000356786 GLRX2Q9NS18 164 aa16.76■□□□□ 0.27
CCDC88B-202ENST00000356786 PSME4Q14997 1843 aa16.76■□□□□ 0.27
CCDC88B-202ENST00000356786 TRBV9A0A0B4J1U6 114 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 MARCH11A6NNE9 402 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 UBE2CO00762 179 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 CT55Q8WUE5 264 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 GRAMD2BQ96HH9 432 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 SSBP3Q9BWW4 388 aaPredicted RBP16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 HIGD1AQ9Y241 93 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 AUP1Q9Y679 476 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 CASP8AP2Q9UKL3 1982 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 M0R3E3 92 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 ZNF124Q15973 351 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 ASPHD2Q6ICH7 369 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 TMEM265A0A087WTH1 108 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 CTSBP07858 339 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 ERVFRD-1P60508 538 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 CDX2Q99626 313 aaPredicted RBP16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 SCN2AQ99250 2005 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 TET1Q8NFU7 2136 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 MGST3O14880 152 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 CKS2P33552 79 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 SOX8P57073 446 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 TMEM177Q53S58 311 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 GUCD1Q96NT3 240 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 IMMP2LQ96T52 175 aa16.75■□□□□ 0.27
CCDC88B-202ENST00000356786 H0YIZ8 118 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 S1PR2O95136 353 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 KRTCAP3Q53RY4 240 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 GFRALQ6UXV0 394 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 ZNF501Q96CX3 271 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 FGF16O43320 207 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 PPIHO43447 177 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 ZNF735P0CB33 412 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 NPIPB7O75200 414 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 C8orf88P0DMB2 117 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 RPL31P62899 125 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 SPANXN1Q5VSR9 72 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 INO80CQ6PI98 192 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 SGK494Q96LW2 274 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 WNT16Q9UBV4 365 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 SDK2Q58EX2 2172 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 UBALD2Q8IYN6 164 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 WDYHV1Q96HA8 205 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 SDF2L1Q9HCN8 221 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 FSCN3Q9NQT6 498 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 HSPB7Q9UBY9 170 aa16.74■□□□□ 0.27
CCDC88B-202ENST00000356786 HIST1H2BKO60814 126 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 HIST1H2BJP06899 126 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 HIST1H2BOP23527 126 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 HIST1H2BBP33778 126 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 HIST1H2BDP58876 126 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 HIST1H2BCP62807 126 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 HIST2H2BEQ16778 126 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 ZNF826PQ6ZT77 177 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 ABHD12Q8N2K0 398 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 HIST1H2BHQ93079 126 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 HIST1H2BNQ99877 126 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 HIST1H2BMQ99879 126 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 IGHV4-34P06331 123 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 MGPP08493 103 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 BTF3P20290 206 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 TNFSF10P50591 281 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 TWIST1Q15672 202 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 KCNMB1Q16558 191 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 TBL2Q9Y4P3 447 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 ZNF638Q14966 1978 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 MPV17P39210 176 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 NEU1Q99519 415 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 OPN3Q9H1Y3 402 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 COA4Q9NYJ1 87 aa16.73■□□□□ 0.27
CCDC88B-202ENST00000356786 TMEM189A5PLL7 270 aa16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 LRRC75BQ2VPJ9 315 aa16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 IGHV5-10-1A0A0J9YXX1 117 aa16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 FOXA3P55318 350 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 CENPWQ5EE01 88 aa16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 BHLHA15Q7RTS1 189 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 CLDND2Q8NHS1 167 aa16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 F8VVB4 439 aa16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 F8VWA3 439 aa16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 SLC17A3O00476 420 aa16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 HSPE1P61604 102 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 ZNF788Q6ZQV5 615 aa16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 F11RQ9Y624 299 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 CELA2AP08217 269 aa16.72■□□□□ 0.27
CCDC88B-202ENST00000356786 TMEM238LA0A1B0GVL6 79 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 A6NJY4 79 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 GCHFRP30047 84 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 DRAM1Q8N682 238 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 OR1N2Q8NGR9 330 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 TMUB1Q9BVT8 246 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 AKIRIN1Q9H9L7 192 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 PEF1Q9UBV8 284 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 OR10AG1Q8NH19 301 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 SCNM1Q9BWG6 230 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 COLCA2A8K830 154 aa16.71■□□□□ 0.27
CCDC88B-202ENST00000356786 K7N7A8 449 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms