RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 NIT1Q86X76 327 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 ST6GALNAC3Q8NDV1 305 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 OR10P1Q8NGE3 313 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 C5orf30Q96GV9 206 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 DEFB126Q9BYW3 111 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 WNT10AQ9GZT5 417 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 PRDM6Q9NQX0 595 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 TUBG2Q9NRH3 451 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 DLL3Q9NYJ7 618 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 COX11Q9Y6N1 276 aa5.7□□□□□ -1.5
VPS39-202ENST00000348544 A0A1W2PS18 150 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 ZNF716A6NP11 495 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 DUX1O43812 170 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 ZNF253O75346 499 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 NXPH2O95156 264 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 C3orf79P0CE67 100 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 ARL14EPLP0DKL9 152 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 LIFP15018 202 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 PMCHP20382 165 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 TSPOP30536 169 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 AMTP48728 403 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 ZNF83P51522 516 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 EDDM3BP56851 147 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 RPL30P62888 115 aaKnown RBP5.69□□□□□ -1.5
VPS39-202ENST00000348544 TMEM249Q2WGJ8 235 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 CEACAM21Q3KPI0 293 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 MKXQ8IYA7 352 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 ATOH7Q8N100 152 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 UHRF2Q96PU4 802 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 SFXN3Q9BWM7 321 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 PRDM14Q9GZV8 571 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 YTHDF2Q9Y5A9 579 aaKnown RBP5.69□□□□□ -1.5
VPS39-202ENST00000348544 TNRC6BQ9UPQ9 1833 aaKnown RBP5.69□□□□□ -1.5
VPS39-202ENST00000348544 EYSQ5T1H1 3165 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 TRAV9-1A0A075B6T8 112 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 IGHV2OR16-5A0A0B4J2B6 119 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 LRRC30A6NM36 301 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 GFRA1P56159 465 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 CARD18P57730 90 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 BRWD1-AS2P59051 145 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 ZNF816Q0VGE8 651 aaPredicted RBP5.69□□□□□ -1.5
VPS39-202ENST00000348544 KIAA1644Q3SXP7 199 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 FAM53AQ6NSI3 398 aaPredicted RBP5.69□□□□□ -1.5
VPS39-202ENST00000348544 TIPARPQ7Z3E1 657 aaKnown RBP5.69□□□□□ -1.5
VPS39-202ENST00000348544 RABEPKQ7Z6M1 372 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 SVIPQ8NHG7 77 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 KCNE4Q8WWG9 221 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 RAB1CQ92928 201 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 AKIRIN1Q9H9L7 192 aaPredicted RBP5.69□□□□□ -1.5
VPS39-202ENST00000348544 CHODLQ9H9P2 273 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 RBM7Q9Y580 266 aaKnown RBP5.69□□□□□ -1.5
VPS39-202ENST00000348544 WDR87Q6ZQQ6 2873 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 ESPL1Q14674 2120 aa5.69□□□□□ -1.5
VPS39-202ENST00000348544 MYO9BQ13459 2157 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 SAA2-SAA4A0A096LPE2 208 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 IGHV2-70DA0A0C4DH43 119 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 EPOPA6NHQ4 379 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 M0QZ24 198 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 S1PR2O95136 353 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 IGHV3-9P01782 118 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 RNF151Q2KHN1 245 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 ZNF718Q3SXZ3 478 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 MORN2Q502X0 79 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 LCN12Q6JVE5 192 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 AAED1Q7RTV5 226 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 MMD2Q8IY49 270 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 OR8I2Q8N0Y5 310 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 KCNS1Q96KK3 526 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 SF3B5Q9BWJ5 86 aaKnown RBP5.68□□□□□ -1.5
VPS39-202ENST00000348544 DEPPQ9NTK1 212 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 WDR83OSQ9Y284 106 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 V9GYV3 84 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 USF3Q68DE3 2245 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 TNRC6AQ8NDV7 1962 aaKnown RBP5.68□□□□□ -1.5
VPS39-202ENST00000348544 CABIN1Q9Y6J0 2220 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 C15orf62A8K5M9 175 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 C17orf112F2Z3M2 114 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 GDF9O60383 454 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 SPINK4O60575 86 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 RHBDL1O75783 438 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 CLDN14O95500 239 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 CCNOP22674 350 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 PRRX1P54821 245 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 DSCR4P56555 118 aaPredicted RBP5.68□□□□□ -1.5
VPS39-202ENST00000348544 RAC1P63000 192 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 ZXDAP98168 799 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 FBLN7Q53RD9 439 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 Q6P435 159 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 MCEMP1Q8IX19 187 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 FAM19A2Q8N3H0 131 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 ZNF738Q8NE65 137 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 GMPPAQ96IJ6 420 aaPredicted RBP5.68□□□□□ -1.5
VPS39-202ENST00000348544 GNB1LQ9BYB4 327 aa5.68□□□□□ -1.5
VPS39-202ENST00000348544 GSX1Q9H4S2 264 aaPredicted RBP5.68□□□□□ -1.5
VPS39-202ENST00000348544 IGHV2-26A0A0B4J1V2 119 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 IGHV1OR15-9A0A0B4J2B8 117 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 ZNF503-AS2A6NEH8 195 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 DPRXA6NFQ7 191 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 C17orf98A8MV24 154 aa5.67□□□□□ -1.5
VPS39-202ENST00000348544 ZNF324O75467 553 aaPredicted RBP5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms