RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 F2RL2O00254 374 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 IGKV1D-33P01593 117 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 IGKV1-33P01594 117 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 GATA4P43694 442 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 SELENOVP59797 346 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 KHDC3LQ587J8 217 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 TMEM41BQ5BJD5 291 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 C1orf229Q6ZS94 237 aaPredicted RBP12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 ZNF429Q86V71 674 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 CISD2Q8N5K1 135 aaKnown RBP12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 RAB39BQ96DA2 213 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 PARD6GQ9BYG4 376 aaPredicted RBP12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 UNKLQ9H9P5 680 aaKnown RBP12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 DCAF16Q9NXF7 216 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 RNF7Q9UBF6 113 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 Q9UFV3 132 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 KALRNO60229 2985 aa12.31□□□□□ -0.44
CLCNKA-201ENST00000331433 PKDREJQ9NTG1 2253 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 RAI1Q7Z5J4 1906 aaPredicted RBP12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 NDUFA2O43678 99 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 MT-ND4LP03901 98 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 FOLR2P14207 255 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 MBD3L1Q8WWY6 194 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 TUBA4BQ9H853 241 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 BCL2P10415 239 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 C17orf58Q2M2W7 97 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 ACSM6Q6P461 480 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 RPP25LQ8N5L8 163 aaKnown RBP12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 OR10P1Q8NGE3 313 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 TMEM147Q9BVK8 224 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 SEBOXQ9HB31 216 aaPredicted RBP12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 OR6C3Q9NZP0 311 aa12.3□□□□□ -0.44
CLCNKA-201ENST00000331433 DYSFO75923 2080 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 YLPM1P49750 1951 aaKnown RBP12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 TANC2Q9HCD6 1990 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 MAP1LC3B2A6NCE7 125 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 CGB3P0DN86 165 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 CGB7P0DN87 165 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 PTAFRP25105 342 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 AKR1D1P51857 326 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 TDGF1P3P51864 188 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 TFF3Q07654 80 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 CIB3Q96Q77 187 aaPredicted RBP12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 MAP1LC3BQ9GZQ8 125 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 IL19Q9UHD0 177 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 ZNF727A8MUV8 499 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 PRRG2O14669 202 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 HMGB3O15347 200 aaKnown RBP12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 HPRT1P00492 218 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 IFNA17P01571 189 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 FGF7P21781 194 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 RPL35P42766 123 aaKnown RBP12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 RAB11AP62491 216 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 PRAMEF5Q5TYX0 476 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 WFDC8Q8IUA0 241 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 ZNF561Q8N587 486 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 FAM216BQ8N7L0 139 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 FAM222BQ8WU58 562 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 PINX1Q96BK5 328 aaKnown RBP12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 CCL13Q99616 98 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 BIN3Q9NQY0 253 aa12.29□□□□□ -0.44
CLCNKA-201ENST00000331433 TET2Q6N021 2002 aaPredicted RBP12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 TLN1Q9Y490 2541 aaKnown RBP12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 GYPAP02724 150 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 TAGLN2P37802 199 aaKnown RBP12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 RAB5BP61020 215 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 DLK1P80370 383 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 STUMQ69YW2 141 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 Q8NA96 180 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 NIPSNAP3BQ9BS92 247 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 TRAV3A0A0B4J244 114 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 OR2C1O95371 312 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 RAB5AP20339 215 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 CCL8P80075 99 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 TLE1Q04724 770 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 ATP6V1FQ16864 119 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 CT45A1Q5HYN5 189 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 ASCL5Q7RTU5 278 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 ZCCHC24Q8N2G6 241 aaKnown RBP12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 CT45A3Q8NHU0 189 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 SNRNP40Q96DI7 357 aaKnown RBP12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 SDSLQ96GA7 329 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 GAFA1Q96PS6 74 aa12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 CISD1Q9NZ45 108 aaKnown RBP12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 KLF2Q9Y5W3 355 aaPredicted RBP12.28□□□□□ -0.44
CLCNKA-201ENST00000331433 KBTBD11-OT1A0A1B0GTJ5 212 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 C15orf62A8K5M9 175 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 C1orf196B1AJZ1 125 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 C16orf97H3BN30 126 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 FAM90A2PQ658T7 463 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 TCF23Q7RTU1 214 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 MRGPRGQ86SM5 289 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 S1PR3Q99500 378 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 SLC25A22Q9H936 323 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 SLC39A9Q9NUM3 307 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 TIMM9Q9Y5J7 89 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 RNF212Q495C1 297 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 TMEM108Q6UXF1 575 aa12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 CENPVQ7Z7K6 275 aaPredicted RBP12.27□□□□□ -0.45
CLCNKA-201ENST00000331433 OR4A16Q8NH70 328 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms