RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 IFITM10A6NMD0 228 aa8.71□□□□□ -1.01
CHD3-201ENST00000330494 FDX2Q6P4F2 183 aa8.71□□□□□ -1.01
CHD3-201ENST00000330494 ERVH48-1M5A8F1 160 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 UNC119Q13432 240 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 LINC01590Q5TEZ4 76 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 SCGB1D4Q6XE38 83 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 ABHD12Q8N2K0 398 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 PHF3Q92576 2039 aaKnown RBP8.71□□□□□ -1.02
CHD3-201ENST00000330494 PNRC1Q12796 327 aaPredicted RBP8.71□□□□□ -1.02
CHD3-201ENST00000330494 MUC15Q8N387 334 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 PIMREGQ9BSJ6 248 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 ZNF703Q9H7S9 590 aaPredicted RBP8.71□□□□□ -1.02
CHD3-201ENST00000330494 CBLN4Q9NTU7 201 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 PITX3O75364 302 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 FAM106CPP0CH98 169 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 CSRP3P50461 194 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 CCDC144NLQ6NUI1 221 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 SCNM1Q9BWG6 230 aa8.71□□□□□ -1.02
CHD3-201ENST00000330494 IGHV1-69-2A0A0G2JMI3 117 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 S1PR2O95136 353 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 TFF1P04155 84 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 HSPB1P04792 205 aaKnown RBP8.7□□□□□ -1.02
CHD3-201ENST00000330494 UMODP07911 640 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 LCN2P80188 198 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 DMRTA1Q5VZB9 504 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 LINC00469Q8N7U9 141 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 H0YL77 283 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 DEDDO75618 318 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 FGFRL1Q8N441 504 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 HSPB8Q9UJY1 196 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 LOC105371242A0A075B767 164 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 CDS2O95674 445 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 CA2P00918 260 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 UNQ5815/PRO19632Q6UWF5 114 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 ZBTB34Q8NCN2 500 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 OR8A1Q8NGG7 326 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 AQP3Q92482 292 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 RAB24Q969Q5 203 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 GPR146Q96CH1 333 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 C16orf92Q96LL3 132 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 SHISA5Q8N114 240 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 SH3BGRL3Q9H299 93 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 ZNF107Q9UII5 783 aaPredicted RBP8.7□□□□□ -1.02
CHD3-201ENST00000330494 TRBV5-7A0A0A0MS05 114 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 B4DEV8 164 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 CA11O75493 328 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 HOXD4P09016 255 aaPredicted RBP8.7□□□□□ -1.02
CHD3-201ENST00000330494 P2RY4P51582 365 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 ZNF841Q6ZN19 808 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 PNKDQ8N490 385 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 IGLV3-21P80748 117 aaPredicted RBP8.7□□□□□ -1.02
CHD3-201ENST00000330494 TWIST1Q15672 202 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 DGAT2L7PQ6IED9 249 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 TMEM116Q8NCL8 245 aa8.7□□□□□ -1.02
CHD3-201ENST00000330494 MFSD2BA6NFX1 497 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 FCGR2BP31994 310 aaPredicted RBP8.69□□□□□ -1.02
CHD3-201ENST00000330494 KLRB1Q12918 225 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 MIC13Q5XKP0 118 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 ZNF818PQ6ZRF7 136 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 MRPL37Q9BZE1 423 aaKnown RBP8.69□□□□□ -1.02
CHD3-201ENST00000330494 TNFSF18Q9UNG2 199 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 MYLKQ15746 1914 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 IGHV3-66A0A0C4DH42 116 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 H0Y980 276 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 ZG16O60844 167 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 TTC32Q5I0X7 151 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 SELENOHQ8IZQ5 122 aaKnown RBP8.69□□□□□ -1.02
CHD3-201ENST00000330494 MPDZO75970 2070 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 BSPH1Q075Z2 132 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 RPL39P5Q59GN2 51 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 GBGT1Q8N5D6 347 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 ARL6IP6Q8N6S5 226 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 RAB37Q96AX2 223 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 IGSF23A1L1A6 192 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 IGKV3-20P01619 116 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 TRGC2P03986 189 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 PAFAH1B2P68402 229 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 SRSF9Q13242 221 aaKnown RBP eCLIP8.69□□□□□ -1.02
CHD3-201ENST00000330494 LY6DQ14210 128 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 VAX1Q5SQQ9 334 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 LAIR2Q6ISS4 152 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 SOD3P08294 240 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 LINC00869P0C866 280 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 OR4A5Q8NH83 315 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 PTX4Q96A99 478 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 SNRNP40Q96DI7 357 aaKnown RBP8.69□□□□□ -1.02
CHD3-201ENST00000330494 SFXN3Q9BWM7 321 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 NPVFQ9HCQ7 196 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 HYPMO75409 117 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 IGHMP01871 453 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 TAS2R60P59551 318 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 SSX8Q7RTT4 187 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 MRPL30Q8TCC3 161 aaKnown RBP8.69□□□□□ -1.02
CHD3-201ENST00000330494 PRDM14Q9GZV8 571 aa8.69□□□□□ -1.02
CHD3-201ENST00000330494 IGHV3OR16-13A0A075B7E8 117 aa8.68□□□□□ -1.02
CHD3-201ENST00000330494 IGHV3-74A0A0B4J1X5 117 aa8.68□□□□□ -1.02
CHD3-201ENST00000330494 SNURFLB1AK76 121 aa8.68□□□□□ -1.02
CHD3-201ENST00000330494 CECR9P0C854 216 aa8.68□□□□□ -1.02
CHD3-201ENST00000330494 NMUP48645 174 aa8.68□□□□□ -1.02
CHD3-201ENST00000330494 RPL8P62917 257 aaKnown RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms