RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 PPIFP30405 207 aaKnown RBP6.63□□□□□ -1.35
SCN9A-201ENST00000303354 CD300CQ08708 224 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 IL24Q13007 206 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 KIAA1644Q3SXP7 199 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 GRIFINA4D1Z8 144 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 RPLP1P05386 114 aaKnown RBP6.63□□□□□ -1.35
SCN9A-201ENST00000303354 P2RY1P47900 373 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 ATP6V1FQ16864 119 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 MIXL1Q9H2W2 232 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 F11RQ9Y624 299 aaKnown RBP6.63□□□□□ -1.35
SCN9A-201ENST00000303354 RNF223E7ERA6 249 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 CRISP2P16562 243 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 BSXQ3C1V8 233 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 ZNF585BQ52M93 769 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 C3orf56Q8N813 242 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 OR4C5Q8NGB2 326 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 OR11H7Q8NGC8 314 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 BET1LQ9NYM9 111 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 CLPPQ16740 277 aaPredicted RBP6.63□□□□□ -1.35
SCN9A-201ENST00000303354 SLIRPQ9GZT3 109 aaKnown RBP6.63□□□□□ -1.35
SCN9A-201ENST00000303354 NPIPB11E5RHQ5 1161 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 HERVK_113P61574 105 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 ZNF329Q86UD4 541 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 NPVFQ9HCQ7 196 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 CACFD1Q9UGQ2 172 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 CXorf1O96002 111 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 PRSS2P07478 247 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 ATP6V0CP27449 155 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 CKS2P33552 79 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 FAM159AQ6UWV7 190 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 GCSAMQ8N6F7 178 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 RAB33BQ9H082 229 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 DEPPQ9NTK1 212 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 PRRC2BQ5JSZ5 2229 aaKnown RBP6.63□□□□□ -1.35
SCN9A-201ENST00000303354 BCORQ6W2J9 1755 aa6.63□□□□□ -1.35
SCN9A-201ENST00000303354 MC5RP33032 325 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 TNFSF10P50591 281 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 GOLT1AQ6ZVE7 132 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 CYB5R1Q9UHQ9 305 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 DPPA3Q6W0C5 159 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 ZXDCQ2QGD7 858 aaPredicted RBP6.62□□□□□ -1.35
SCN9A-201ENST00000303354 DRAM1Q8N682 238 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 APCDD1LQ8NCL9 501 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 NFAM1Q8NET5 270 aaPredicted RBP6.62□□□□□ -1.35
SCN9A-201ENST00000303354 CHCHD2Q9Y6H1 151 aaPredicted RBP6.62□□□□□ -1.35
SCN9A-201ENST00000303354 ICAM4Q14773 271 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 VN1R17PQ8TDU5 208 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 KIAA0100Q14667 2235 aaKnown RBP6.62□□□□□ -1.35
SCN9A-201ENST00000303354 ZNF638Q14966 1978 aaKnown RBP6.62□□□□□ -1.35
SCN9A-201ENST00000303354 FOXG1P55316 489 aaPredicted RBP6.62□□□□□ -1.35
SCN9A-201ENST00000303354 SNRPD3P62318 126 aaKnown RBP6.62□□□□□ -1.35
SCN9A-201ENST00000303354 DMRTA1Q5VZB9 504 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 ZNF818PQ6ZRF7 136 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 WNT10AQ9GZT5 417 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 COL11A2P13942 1736 aaPredicted RBP6.62□□□□□ -1.35
SCN9A-201ENST00000303354 IGHV2OR16-5A0A0B4J2B6 119 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 C7orf71A4D174 169 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 CRYBB3P26998 211 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 FAM71F2Q6NXP2 309 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 LINC00305Q7Z4B0 112 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 OR9G1Q8NH87 305 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 CALHM1Q8IU99 346 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 NAT8Q9UHE5 227 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 HMGA2P52926 109 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 SELENOHQ8IZQ5 122 aaKnown RBP6.62□□□□□ -1.35
SCN9A-201ENST00000303354 SH3BGRL3Q9H299 93 aa6.62□□□□□ -1.35
SCN9A-201ENST00000303354 RRHO14718 337 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 EFEMP2O95967 443 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 Q6ZT83 130 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 ASCC3Q8N3C0 2202 aaKnown RBP6.61□□□□□ -1.35
SCN9A-201ENST00000303354 SAA1P0DJI8 122 aaPredicted RBP6.61□□□□□ -1.35
SCN9A-201ENST00000303354 TDGF1P13385 188 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 LDLRAD2Q5SZI1 272 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 TMEM54Q969K7 222 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 RAB37Q96AX2 223 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 RARRES2Q99969 163 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 MRPL20Q9BYC9 149 aaKnown RBP6.61□□□□□ -1.35
SCN9A-201ENST00000303354 TIMM23BQ5SRD1 257 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 RNASE6Q93091 150 aaKnown RBP6.61□□□□□ -1.35
SCN9A-201ENST00000303354 RHOVQ96L33 236 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 BRWD3Q6RI45 1802 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 PRR32B1ATL7 298 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 THBDP07204 575 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 GTF2H5Q6ZYL4 71 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 OR4C13Q8NGP0 309 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 C18orf15Q96N68 181 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 SLC35B3Q9H1N7 401 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 IGKV1D-42A0A075B6H8 117 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 CLDN34H7C241 214 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 SUMO2P61956 95 aaKnown RBP6.61□□□□□ -1.35
SCN9A-201ENST00000303354 PSG7Q13046 419 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 UBE2E2Q96LR5 201 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 Q96MF0 132 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 ASCL2Q99929 193 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 TNS1Q9HBL0 1735 aaKnown RBP6.61□□□□□ -1.35
SCN9A-201ENST00000303354 CEACAM4O75871 244 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 MMP16P51512 607 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 EGR4Q05215 589 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 OR13A1Q8NGR1 328 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 A0A0U1RRA0 63 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms