RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 RBMY1DP0C7P1 496 aaKnown RBP11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 MAP2K4P45985 399 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 MRPS15P82914 257 aaKnown RBP11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 RHOGP84095 191 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 DEFA5Q01523 94 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 EXOSC2Q13868 293 aaKnown RBP11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 PACRGLQ8N7B6 248 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 ADTRPQ96IZ2 230 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 CENPOQ9BU64 300 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 OR2D2Q9H210 308 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 KCNK15Q9H427 330 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 ZC4H2Q9NQZ6 224 aa11.16□□□□□ -0.62
CCDC88B-201ENST00000301897 TRBV9A0A0B4J1U6 114 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 IGKV1-6A0A0C4DH72 117 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 SLC17A2O00624 439 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 ACTL6BO94805 426 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 CD7P09564 240 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 UBE2KP61086 200 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 PRSS8Q16651 343 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 DEFB114Q30KQ6 69 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 AHSA2Q719I0 299 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 SLC16A13Q7RTY0 426 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 CEACAM19Q7Z692 300 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 SLC25A42Q86VD7 318 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 C8orf59Q8N0T1 100 aaPredicted RBP11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 DEFB125Q8N687 156 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 NECAP1Q8NC96 275 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 OR56B1Q8NGI3 324 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 OR10J5Q8NHC4 309 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 FBLIM1Q8WUP2 373 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 SRSF12Q8WXF0 261 aaKnown RBP11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 LINC00476Q8WZB0 136 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 SPIN2AQ99865 258 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 SPIN2BQ9BPZ2 258 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 MND1Q9BWT6 205 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 PECRQ9BY49 303 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 PLGRKTQ9HBL7 147 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 AKIP1Q9NQ31 210 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 FKBP14Q9NWM8 211 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 SDHAF2Q9NX18 166 aa11.15□□□□□ -0.62
CCDC88B-201ENST00000301897 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 FOXI3A8MTJ6 420 aaPredicted RBP11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 FABP7O15540 132 aa11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 UCHL1P09936 223 aa11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 KIR2DS2P43631 304 aa11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 TMEM50BP56557 158 aa11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 TNXAQ16473 311 aa11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 GUCA2BQ16661 112 aa11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 OSR1Q8TAX0 266 aaPredicted RBP11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 ARHGAP5-AS1Q96IT6 56 aa11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 CABLES2Q9BTV7 478 aa11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 ZNF230Q9UIE0 474 aaPredicted RBP11.14□□□□□ -0.63
CCDC88B-201ENST00000301897 C2orf70A6NJV1 201 aa11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 SRRM4A7MD48 611 aaKnown RBP11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 LGALS9O00182 355 aa11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 BET1O15155 118 aa11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 RBMXL2O75526 392 aaKnown RBP11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 CD3GP09693 182 aa11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 APELAP0DMC3 54 aa11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 FOLR2P14207 255 aa11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 P2RY14Q15391 338 aa11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 BPIFB6Q8NFQ5 453 aa11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 ACOT12Q8WYK0 555 aa11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 RBM7Q9Y580 266 aaKnown RBP11.13□□□□□ -0.63
CCDC88B-201ENST00000301897 GGCTO75223 188 aaKnown RBP11.12□□□□□ -0.63
CCDC88B-201ENST00000301897 GNAO1P09471 354 aa11.12□□□□□ -0.63
CCDC88B-201ENST00000301897 RAB11BQ15907 218 aa11.12□□□□□ -0.63
CCDC88B-201ENST00000301897 MRGPRG-AS1Q2M3A8 158 aa11.12□□□□□ -0.63
CCDC88B-201ENST00000301897 ANKRD55Q3KP44 614 aa11.12□□□□□ -0.63
CCDC88B-201ENST00000301897 TTC9CQ8N5M4 171 aa11.12□□□□□ -0.63
CCDC88B-201ENST00000301897 TRBV6-7A0A0A0MS04 114 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 NUPR2A6NF83 97 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 ARL6IP5O75915 188 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 CRYZL1O95825 349 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 CDK1P06493 297 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 ZNF45Q02386 682 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 SPHARQ15513 63 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 C15orf32Q32M92 178 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 MMD2Q8IY49 270 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 GINS4Q9BRT9 223 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 GGTLC1Q9BX51 225 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 WFDC10AQ9H1F0 79 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 ZNF257Q9Y2Q1 563 aa11.11□□□□□ -0.63
CCDC88B-201ENST00000301897 NDUFB8O95169 186 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 LY6G6CO95867 125 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 FCGR3AP08637 254 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 DUTP33316 252 aaKnown RBP11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 PSMD7P51665 324 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 CDK10Q15131 360 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 TRAM1Q15629 374 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 SSX1Q16384 188 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 FAM106AQ4KMX7 169 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 IGSF11Q5DX21 431 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 PLAC9Q5JTB6 97 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 ZNF57Q68EA5 555 aaPredicted RBP11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 IDO2Q6ZQW0 420 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 GPHB5Q86YW7 130 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 DDB2Q92466 427 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 FAM3DQ96BQ1 224 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 GFI1Q99684 422 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms