RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 LYRM2Q9NU23 88 aaPredicted RBP12.23□□□□□ -0.45
CCDC47-201ENST00000225726 NXPH3O95157 252 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 GAPDHP04406 335 aaKnown RBP12.22□□□□□ -0.45
CCDC47-201ENST00000225726 LINC00205P59089 165 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 LYG1Q8N1E2 194 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 CLRN3Q8NCR9 226 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 TIMD4Q96H15 378 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 SLC25A31Q9H0C2 315 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 RALYQ9UKM9 306 aaKnown RBP12.22□□□□□ -0.45
CCDC47-201ENST00000225726 FAM90A26D6RGX4 464 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 GPR37O15354 613 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 CHST1O43916 411 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 KRASP01116 189 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 THBS3P49746 956 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 AVPI1Q5T686 147 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 ZNF841Q6ZN19 808 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 DDB2Q92466 427 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 RAB1CQ92928 201 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 ADTRPQ96IZ2 230 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 ZNF251Q9BRH9 671 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 AUP1Q9Y679 476 aa12.22□□□□□ -0.45
CCDC47-201ENST00000225726 FCGR3BO75015 233 aa12.21□□□□□ -0.45
CCDC47-201ENST00000225726 GOSR1O95249 250 aa12.21□□□□□ -0.45
CCDC47-201ENST00000225726 HPRT1P00492 218 aa12.21□□□□□ -0.45
CCDC47-201ENST00000225726 NMBP08949 121 aa12.21□□□□□ -0.45
CCDC47-201ENST00000225726 RRASP10301 218 aa12.21□□□□□ -0.45
CCDC47-201ENST00000225726 SNRPEP62304 92 aaKnown RBP12.21□□□□□ -0.45
CCDC47-201ENST00000225726 C1orf229Q6ZS94 237 aaPredicted RBP12.21□□□□□ -0.45
CCDC47-201ENST00000225726 RAB40CQ96S21 281 aa12.21□□□□□ -0.45
CCDC47-201ENST00000225726 S1PR3Q99500 378 aa12.21□□□□□ -0.45
CCDC47-201ENST00000225726 RELNP78509 3460 aa12.21□□□□□ -0.45
CCDC47-201ENST00000225726 EWSR1Q01844 656 aaKnown RBP eCLIP12.21□□□□□ -0.45
CCDC47-201ENST00000225726 RPL7L1Q6DKI1 246 aaKnown RBP12.21□□□□□ -0.45
CCDC47-201ENST00000225726 FAM24AA6NFZ4 105 aa12.21□□□□□ -0.46
CCDC47-201ENST00000225726 EIF3GO75821 320 aaKnown RBP eCLIP12.21□□□□□ -0.46
CCDC47-201ENST00000225726 CAV2P51636 162 aa12.21□□□□□ -0.46
CCDC47-201ENST00000225726 MIDNQ504T8 468 aa12.21□□□□□ -0.46
CCDC47-201ENST00000225726 C8orf31Q8N9H6 132 aa12.21□□□□□ -0.46
CCDC47-201ENST00000225726 IGSF23A1L1A6 192 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 JTBO76095 146 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 LY6HO94772 140 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 H2BFWTQ7Z2G1 175 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 OR8B3Q8NGG8 313 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 R3HDM4Q96D70 268 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 BSCL2Q96G97 398 aaPredicted RBP12.2□□□□□ -0.46
CCDC47-201ENST00000225726 OR8B2Q96RD0 313 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 SMIM3Q9BZL3 60 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 CHODLQ9H9P2 273 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 PPIHO43447 177 aaKnown RBP12.2□□□□□ -0.46
CCDC47-201ENST00000225726 SYNGR2O43760 224 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 PAX9P55771 341 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 RPL23AP62750 156 aaKnown RBP12.2□□□□□ -0.46
CCDC47-201ENST00000225726 NEIL1Q96FI4 390 aaPredicted RBP12.2□□□□□ -0.46
CCDC47-201ENST00000225726 BBC3Q96PG8 261 aaPredicted RBP12.2□□□□□ -0.46
CCDC47-201ENST00000225726 TMEM50AO95807 157 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 ERVFRD-1P60508 538 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 CLEC9AQ6UXN8 241 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 PDZD9Q8IXQ8 264 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 TMEM252Q8N6L7 170 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 OR4S2Q8NH73 311 aa12.2□□□□□ -0.46
CCDC47-201ENST00000225726 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.2□□□□□ -0.46
CCDC47-201ENST00000225726 MARCH11A6NNE9 402 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 PRB1P04280 392 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 PCP4P48539 62 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 NHLH2Q02577 135 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 LINC00311Q8N616 119 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 ZNF596Q8TC21 504 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 IGSF10Q6WRI0 2623 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 YLPM1P49750 1951 aaKnown RBP12.19□□□□□ -0.46
CCDC47-201ENST00000225726 FAM90A9PA6NNJ1 464 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 BAXQ07812 192 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 HSPB7Q9UBY9 170 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 WSB1Q9Y6I7 421 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 USP24Q9UPU5 2620 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 A0A087X0M5 115 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 BORCS7-ASMTA0A0B4J1R7 106 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 A0A1B0GX30 115 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 MED6O75586 246 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 ZNF833PQ6ZTB9 187 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 ZNF295-AS1Q8N0V1 137 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 UBAC2Q8NBM4 344 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 C8orf46Q8TAG6 207 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 WFDC1Q9HC57 220 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 MED9Q9NWA0 146 aa12.19□□□□□ -0.46
CCDC47-201ENST00000225726 A0A1W2PPH5 198 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 S100A6P06703 90 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 AKR1C3P42330 323 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 TAS2R30P59541 319 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 TNFRSF9Q07011 255 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 USF2Q15853 346 aaPredicted RBP12.18□□□□□ -0.46
CCDC47-201ENST00000225726 ZNF383Q8NA42 475 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 SMIM8Q96KF7 97 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 USF3Q68DE3 2245 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 IGHV1-8P0DP01 117 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 SPP1P10451 314 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 CDKN1AP38936 164 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 ERVK-16P61578 105 aa12.18□□□□□ -0.46
CCDC47-201ENST00000225726 FLI1Q01543 452 aaPredicted RBP12.18□□□□□ -0.46
CCDC47-201ENST00000225726 EIF5AL1Q6IS14 154 aaKnown RBP12.18□□□□□ -0.46
CCDC47-201ENST00000225726 ARV1Q9H2C2 271 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms