RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PATZ1Q9HBE1 687 aaKnown RBP10.37□□□□□ -0.75
NUP88-201ENST00000225696 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.37□□□□□ -0.75
NUP88-201ENST00000225696 ZDBF2Q9HCK1 2354 aa10.37□□□□□ -0.75
NUP88-201ENST00000225696 RBMXL2O75526 392 aaKnown RBP10.36□□□□□ -0.75
NUP88-201ENST00000225696 PDGFBP01127 241 aaPredicted RBP10.36□□□□□ -0.75
NUP88-201ENST00000225696 SERPINA7P05543 415 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 CD82P27701 267 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 SRP14P37108 136 aaKnown RBP10.36□□□□□ -0.75
NUP88-201ENST00000225696 EDDM3BP56851 147 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 MOB1BQ7L9L4 216 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 TMEM144Q7Z5S9 345 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 PLPPR2Q96GM1 343 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 TTTY12Q9BZ98 90 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 FKBP11Q9NYL4 201 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 BOKQ9UMX3 212 aaPredicted RBP10.36□□□□□ -0.75
NUP88-201ENST00000225696 SIT1Q9Y3P8 196 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 TRAPPC1Q9Y5R8 145 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 KNTC1P50748 2209 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 PIGBOS1A0A0B4J2F0 54 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 SYNGR4O95473 234 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 FRMD6-AS1P0C7T7 363 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 CDC34P49427 236 aaPredicted RBP10.36□□□□□ -0.75
NUP88-201ENST00000225696 RAB4BP61018 213 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 ZNF146Q15072 292 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 ACOT6Q3I5F7 207 aaPredicted RBP10.36□□□□□ -0.75
NUP88-201ENST00000225696 RFESDQ8TAC1 157 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 PXMP4Q9Y6I8 212 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 GPR179Q6PRD1 2367 aa10.36□□□□□ -0.75
NUP88-201ENST00000225696 DCHS1Q96JQ0 3298 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 C15orf62A8K5M9 175 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 VENTXO95231 258 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 HBZP02008 142 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 MBP02144 154 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 SSTR5P35346 364 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 VWC2Q2TAL6 325 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 LINC00696Q6ZRV3 163 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 MCEMP1Q8IX19 187 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 TMEM251Q8N6I4 163 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 SGMS2Q8NHU3 365 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 MRGPRDQ8TDS7 321 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 IMMP2LQ96T52 175 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 DCTN5Q9BTE1 182 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 RTL8AQ9BWD3 113 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 QTRT1Q9BXR0 403 aaKnown RBP10.35□□□□□ -0.75
NUP88-201ENST00000225696 METRNQ9UJH8 293 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 TP53TG3Q9ULZ0 132 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 LOXL2Q9Y4K0 774 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 KMT2EQ8IZD2 1858 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 RRHO14718 337 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 SH2D1BO14796 132 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 HAND1O96004 215 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 ADMP35318 185 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 THBS3P49746 956 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 LINC00310P59036 64 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 MSMO1Q15800 293 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 ATP6V1FQ16864 119 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 IQCJQ1A5X6 159 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 ZNF709Q8N972 641 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 GALMQ96C23 342 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 SDSLQ96GA7 329 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 COQ2Q96H96 371 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 FAM173AQ9BQD7 235 aa10.35□□□□□ -0.75
NUP88-201ENST00000225696 RNF212BA8MTL3 300 aa10.34□□□□□ -0.75
NUP88-201ENST00000225696 OR9G9P0C7N8 305 aa10.34□□□□□ -0.75
NUP88-201ENST00000225696 TRA2AQ13595 282 aaKnown RBP eCLIP10.34□□□□□ -0.75
NUP88-201ENST00000225696 SSPNQ14714 243 aa10.34□□□□□ -0.75
NUP88-201ENST00000225696 ZNF766Q5HY98 468 aa10.34□□□□□ -0.75
NUP88-201ENST00000225696 BCL2L2Q92843 193 aaPredicted RBP10.34□□□□□ -0.75
NUP88-201ENST00000225696 ELOVL5Q9NYP7 299 aa10.34□□□□□ -0.75
NUP88-201ENST00000225696 LAMA5O15230 3695 aa10.34□□□□□ -0.75
NUP88-201ENST00000225696 CCKARP32238 428 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 ERVFC1-1P60608 527 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 PPP1CBP62140 327 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 LCN2P80188 198 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 OR1C1Q15619 314 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 TRIP6Q15654 476 aaKnown RBP10.33□□□□□ -0.76
NUP88-201ENST00000225696 C1orf194Q5T5A4 169 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 KCNIP4Q6PIL6 250 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 H2BFWTQ7Z2G1 175 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 VKORC1L1Q8N0U8 176 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 NAGKQ9UJ70 344 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 HCFC1P51610 2035 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 NCOR1O75376 2440 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 SCO2A0A1W2PP80 73 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 F2Z2F3 143 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 TMPRSS2O15393 492 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 SMPD2O60906 423 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 PROP1O75360 226 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 CLDN14O95500 239 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 ARL14EPLP0DKL9 152 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 RAC2P15153 192 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 SOX8P57073 446 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 LTC4SQ16873 150 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 HLA-DRB5Q30154 266 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 DCAF12Q5T6F0 453 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 SFRP2Q96HF1 295 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 MS4A10Q96PG2 267 aa10.33□□□□□ -0.76
NUP88-201ENST00000225696 PTPRBP23467 1997 aa10.32□□□□□ -0.76
NUP88-201ENST00000225696 TET2Q6N021 2002 aaPredicted RBP10.32□□□□□ -0.76
NUP88-201ENST00000225696 MARCH11A6NNE9 402 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms