RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 A0A1B0GUT8 65 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 CYBAP13498 195 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 GCHFRP30047 84 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 RAC3P60763 192 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 SLC25A48Q6ZT89 311 aaKnown RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 KLHDC9Q8NEP7 349 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 TPSD1Q9BZJ3 242 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 WFDC1Q9HC57 220 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 KIAA0100Q14667 2235 aaKnown RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 GREM1O60565 184 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 SNRPCP09234 159 aaKnown RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 UQCRFS1P47985 274 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 RPS16P62249 146 aaKnown RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 RBPJQ06330 500 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 LYPD6BQ8NI32 183 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 SH3BGRL3Q9H299 93 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 FAM181BA6NEQ2 426 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 ZXDCQ2QGD7 858 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-220ENST00000641603 Q6ZSR6 202 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 OLIG3Q7RTU3 272 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 FAM89BQ8N5H3 189 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 FNDC10F2Z333 226 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 CEACAM3P40198 252 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 TMEM101Q96IK0 257 aa4.03□□□□□ -1.76
SCN1A-220ENST00000641603 LHFPL1Q86WI0 220 aa4.03□□□□□ -1.77
SCN1A-220ENST00000641603 CLEC5AQ9NY25 188 aa4.03□□□□□ -1.77
SCN1A-220ENST00000641603 SEMA5BQ9P283 1151 aa4.03□□□□□ -1.77
SCN1A-220ENST00000641603 MSGN1A6NI15 193 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 IGLC2P0DOY2 106 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 IGLC3P0DOY3 106 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 TNFRSF1AP19438 455 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 REG1BP48304 166 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 ID3Q02535 119 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 DEFB110Q30KQ9 67 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 MOGAT3Q86VF5 341 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 OR1K1Q8NGR3 316 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 NPCDR1Q9BY65 106 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 YAE1D1Q9NRH1 226 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 E9PQ18 207 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 NXPH3O95157 252 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 CNIH1O95406 144 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 TSPO2Q5TGU0 170 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 CACNG8Q8WXS5 425 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 PRELID3AQ96N28 172 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 TMEM126AQ9H061 195 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 HS3ST3B1Q9Y662 390 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 IGHV2-26A0A0B4J1V2 119 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 TMEM189A5PLL7 270 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 HYPMO75409 117 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 RPL31P62899 125 aaKnown RBP4.02□□□□□ -1.77
SCN1A-220ENST00000641603 C1QL3Q5VWW1 255 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF525Q8N782 197 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 HIGD1AQ9Y241 93 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 A0A1W2PP11 408 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 TIAF1O95411 115 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 IGFBP3P17936 291 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-220ENST00000641603 CKS2P33552 79 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 SFTPA2Q8IWL1 248 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 SFTPA1Q8IWL2 248 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 FGF11Q92914 225 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 KCNK17Q96T54 332 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 GFRA4Q9GZZ7 299 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 CSTL1Q9H114 145 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 K7EP34 96 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 SPRY1O43609 319 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-220ENST00000641603 IL18BPO95998 194 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 LGALS3P17931 250 aaKnown RBP4.02□□□□□ -1.77
SCN1A-220ENST00000641603 ASIPP42127 132 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 PGFP49763 221 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 YPEL3P61236 119 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-220ENST00000641603 SRSF6Q13247 344 aaKnown RBP4.02□□□□□ -1.77
SCN1A-220ENST00000641603 CDKN3Q16667 212 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 FAM166AQ6J272 317 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 MRGPRFQ96AM1 343 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 LRRC61Q9BV99 259 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 CXXC4Q9H2H0 198 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 DYNLRB1Q9NP97 96 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 MED29Q9NX70 200 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 MOB4Q9Y3A3 225 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 TRAV8-4A0A0B4J246 113 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF205O95201 554 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 GLI4P10075 376 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 PSG2P11465 335 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 TIMP3P35625 211 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 FOXF1Q12946 379 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 MORN2Q502X0 79 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 PPDPFLQ8WWR9 84 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 C18orf12Q96KH6 178 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 ZNF646O15015 1829 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-220ENST00000641603 PSMB11A5LHX3 300 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 CD38P28907 300 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 TMEM177Q53S58 311 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 CENPWQ5EE01 88 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 LINC01590Q5TEZ4 76 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 Q6ZS49 121 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 SMIM14Q96QK8 99 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 IFNL4K9M1U5 179 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 GDF9O60383 454 aa4.02□□□□□ -1.77
SCN1A-220ENST00000641603 ACRP10323 421 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms