RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 TAS2R43P59537 309 aa11.37□□□□□ -0.59
SYNE2-228ENST00000639659 INSL4Q14641 139 aa11.37□□□□□ -0.59
SYNE2-228ENST00000639659 CD300EQ496F6 205 aaPredicted RBP11.37□□□□□ -0.59
SYNE2-228ENST00000639659 RBM48Q5RL73 367 aaKnown RBP11.37□□□□□ -0.59
SYNE2-228ENST00000639659 ZNF343Q6P1L6 599 aa11.37□□□□□ -0.59
SYNE2-228ENST00000639659 HARBI1Q96MB7 349 aa11.37□□□□□ -0.59
SYNE2-228ENST00000639659 AGMATQ9BSE5 352 aa11.37□□□□□ -0.59
SYNE2-228ENST00000639659 AK3Q9UIJ7 227 aa11.37□□□□□ -0.59
SYNE2-228ENST00000639659 RBMY1BA6NDE4 496 aaKnown RBP11.36□□□□□ -0.59
SYNE2-228ENST00000639659 RBMY1EA6NEQ0 496 aaKnown RBP11.36□□□□□ -0.59
SYNE2-228ENST00000639659 MYL12BO14950 172 aa11.36□□□□□ -0.59
SYNE2-228ENST00000639659 OR2A4O95047 310 aa11.36□□□□□ -0.59
SYNE2-228ENST00000639659 SCTP09683 121 aa11.36□□□□□ -0.59
SYNE2-228ENST00000639659 RBMY1DP0C7P1 496 aaKnown RBP11.36□□□□□ -0.59
SYNE2-228ENST00000639659 UBBP0CG47 229 aa11.36□□□□□ -0.59
SYNE2-228ENST00000639659 MAPK3P27361 379 aaPredicted RBP11.36□□□□□ -0.59
SYNE2-228ENST00000639659 SSBP2P81877 361 aaPredicted RBP11.36□□□□□ -0.59
SYNE2-228ENST00000639659 EXOSC2Q13868 293 aaKnown RBP11.36□□□□□ -0.59
SYNE2-228ENST00000639659 ZNF880Q6PDB4 577 aa11.36□□□□□ -0.59
SYNE2-228ENST00000639659 CYGBQ8WWM9 190 aa11.36□□□□□ -0.59
SYNE2-228ENST00000639659 LINC00476Q8WZB0 136 aa11.36□□□□□ -0.59
SYNE2-228ENST00000639659 SNAPC3Q92966 411 aa11.36□□□□□ -0.59
SYNE2-228ENST00000639659 CXorf65A6NEN9 183 aa11.35□□□□□ -0.59
SYNE2-228ENST00000639659 OR11H12B2RN74 326 aa11.35□□□□□ -0.59
SYNE2-228ENST00000639659 PROP1O75360 226 aa11.35□□□□□ -0.59
SYNE2-228ENST00000639659 PRH1P02810 166 aa11.35□□□□□ -0.59
SYNE2-228ENST00000639659 ST3GAL4Q11206 333 aa11.35□□□□□ -0.59
SYNE2-228ENST00000639659 CBX3Q13185 183 aa11.35□□□□□ -0.59
SYNE2-228ENST00000639659 UNC119Q13432 240 aa11.35□□□□□ -0.59
SYNE2-228ENST00000639659 TNXAQ16473 311 aa11.35□□□□□ -0.59
SYNE2-228ENST00000639659 GLT8D1Q68CQ7 371 aa11.35□□□□□ -0.59
SYNE2-228ENST00000639659 KCNG3Q8TAE7 436 aa11.35□□□□□ -0.59
SYNE2-228ENST00000639659 USMG5Q96IX5 58 aa11.35□□□□□ -0.59
SYNE2-228ENST00000639659 SMPD3Q9NY59 655 aaPredicted RBP11.35□□□□□ -0.59
SYNE2-228ENST00000639659 A0A0A6YYD4 124 aa11.34□□□□□ -0.59
SYNE2-228ENST00000639659 ITGB1BP1O14713 200 aa11.34□□□□□ -0.59
SYNE2-228ENST00000639659 SHOXO15266 292 aa11.34□□□□□ -0.59
SYNE2-228ENST00000639659 RBMXL2O75526 392 aaKnown RBP11.34□□□□□ -0.59
SYNE2-228ENST00000639659 IGLV2-23P01705 113 aa11.34□□□□□ -0.59
SYNE2-228ENST00000639659 EDN2P20800 178 aa11.34□□□□□ -0.59
SYNE2-228ENST00000639659 LINC00322Q6ZN03 302 aaPredicted RBP11.34□□□□□ -0.59
SYNE2-228ENST00000639659 ZNF485Q8NCK3 441 aa11.34□□□□□ -0.59
SYNE2-228ENST00000639659 OR2K2Q8NGT1 345 aa11.34□□□□□ -0.59
SYNE2-228ENST00000639659 ACOT12Q8WYK0 555 aa11.34□□□□□ -0.59
SYNE2-228ENST00000639659 OR2D2Q9H210 308 aa11.34□□□□□ -0.59
SYNE2-228ENST00000639659 RDH8Q9NYR8 311 aa11.34□□□□□ -0.59
SYNE2-228ENST00000639659 SIGLEC8Q9NYZ4 499 aa11.34□□□□□ -0.59
SYNE2-228ENST00000639659 MSGN1A6NI15 193 aa11.33□□□□□ -0.6
SYNE2-228ENST00000639659 BMPR1BO00238 502 aa11.33□□□□□ -0.6
SYNE2-228ENST00000639659 SOCS1O15524 211 aa11.33□□□□□ -0.6
SYNE2-228ENST00000639659 RHOGP84095 191 aa11.33□□□□□ -0.6
SYNE2-228ENST00000639659 P2RY14Q15391 338 aa11.33□□□□□ -0.6
SYNE2-228ENST00000639659 PQLC1Q8N2U9 271 aa11.33□□□□□ -0.6
SYNE2-228ENST00000639659 THRSPQ92748 146 aa11.33□□□□□ -0.6
SYNE2-228ENST00000639659 WDR89Q96FK6 387 aaPredicted RBP11.33□□□□□ -0.6
SYNE2-228ENST00000639659 TMEM68Q96MH6 324 aa11.33□□□□□ -0.6
SYNE2-228ENST00000639659 ST6GALNAC5Q9BVH7 336 aa11.33□□□□□ -0.6
SYNE2-228ENST00000639659 TM2D1Q9BX74 207 aa11.33□□□□□ -0.6
SYNE2-228ENST00000639659 RIMS4Q9H426 269 aaPredicted RBP11.33□□□□□ -0.6
SYNE2-228ENST00000639659 C12orf4Q9NQ89 552 aa11.33□□□□□ -0.6
SYNE2-228ENST00000639659 EFCAB10A6NFE3 127 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 BET1O15155 118 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 AIREO43918 545 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 TUSC2O75896 110 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 CD3GP09693 182 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 OR9G9P0C7N8 305 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 WNT4P56705 351 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 ATP5G2Q06055 141 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 ACSM3Q53FZ2 586 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 IDO2Q6ZQW0 420 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 AHSA2Q719I0 299 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 LAX1Q8IWV1 398 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 CMSS1Q9BQ75 279 aaKnown RBP11.32□□□□□ -0.6
SYNE2-228ENST00000639659 URM1Q9BTM9 101 aaKnown RBP11.32□□□□□ -0.6
SYNE2-228ENST00000639659 S100A14Q9HCY8 104 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 Q9N2K0 584 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 AKIP1Q9NQ31 210 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 MGAT4AQ9UM21 535 aa11.32□□□□□ -0.6
SYNE2-228ENST00000639659 RBM7Q9Y580 266 aaKnown RBP11.32□□□□□ -0.6
SYNE2-228ENST00000639659 IGKV1-6A0A0C4DH72 117 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 ZNF785A8K8V0 405 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 TMEM14DPA8MWL7 114 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 PPP5D1E7EU14 171 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 HLA-AP01891 365 aaKnown RBP11.31□□□□□ -0.6
SYNE2-228ENST00000639659 CRYGBP07316 175 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 TAGLNQ01995 201 aaKnown RBP11.31□□□□□ -0.6
SYNE2-228ENST00000639659 RTL8BQ17RB0 113 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 VMA21Q3ZAQ7 101 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 C1orf100Q5SVJ3 147 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 LRRTM1Q86UE6 522 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 ADAD2Q8NCV1 583 aaKnown RBP11.31□□□□□ -0.6
SYNE2-228ENST00000639659 SETD9Q8NE22 299 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 SRSF12Q8WXF0 261 aaKnown RBP11.31□□□□□ -0.6
SYNE2-228ENST00000639659 CACNG8Q8WXS5 425 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 DDB2Q92466 427 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 PTX4Q96A99 478 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 LPAR5Q9H1C0 372 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 PLGRKTQ9HBL7 147 aa11.31□□□□□ -0.6
SYNE2-228ENST00000639659 ZNF230Q9UIE0 474 aaPredicted RBP11.31□□□□□ -0.6
SYNE2-228ENST00000639659 TRBV6-6A0A0A6YYG2 114 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms