RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TMEM187Q14656 261 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 KIR2DS3Q14952 304 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 SPANXN5Q5MJ07 72 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 PTCRAQ6ISU1 281 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-216ENST00000637968 OR5D13Q8NGL4 314 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 BAHD1Q8TBE0 780 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-216ENST00000637968 SLC35A4Q96G79 324 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 GCM1Q9NP62 436 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 SBF2Q86WG5 1849 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 RER1O15258 196 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 FCN3O75636 299 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 OR5AL1P0C617 328 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 IAPPP10997 89 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 NUP98P52948 1817 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 ANKRD37Q7Z713 158 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 YRDCQ86U90 279 aaKnown RBP4.92□□□□□ -1.62
SCN1A-216ENST00000637968 DOCK8Q8NF50 2099 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 OR1F12Q8NHA8 337 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 ZNF689Q96CS4 500 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-216ENST00000637968 WNT6Q9Y6F9 365 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 ZNF217O75362 1048 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 RTL8BQ17RB0 113 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 MFSD12Q6NUT3 480 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 UBALD2Q8IYN6 164 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 TSKUQ8WUA8 353 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 RTN4RQ9BZR6 473 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 CRIM1Q9NZV1 1036 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 IGLV3-10A0A075B6K4 115 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 SAA2-SAA4A0A096LPE2 208 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 FEZF1A0PJY2 475 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 TMEM8BA6NDV4 472 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 CXorf1O96002 111 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 VDAC1P21796 283 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 DEFB103AP81534 67 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 SLC38A11Q08AI6 406 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 RUNX3Q13761 415 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 PDLIM3Q53GG5 364 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-216ENST00000637968 LY6G5CQ5SRR4 150 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 RFLNAQ6ZTI6 216 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-216ENST00000637968 CDRT4Q8N9R6 151 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 ZC2HC1AQ96GY0 325 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 PRSS27Q9BQR3 290 aa4.92□□□□□ -1.62
SCN1A-216ENST00000637968 MCTS1Q9ULC4 181 aaKnown RBP4.92□□□□□ -1.62
SCN1A-216ENST00000637968 STRCP1A6NGW2 1772 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 NRAPQ86VF7 1730 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 QSER1Q2KHR3 1735 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 LRRC30A6NM36 301 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 OR1D5P58170 312 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 SPATA31B1PQ5VZV4 182 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 C6orf201Q7Z4U5 140 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 CA13Q8N1Q1 262 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 LINC01555Q8NAE3 123 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 OR4F17Q8NGA8 305 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 OR9G4Q8NGQ1 327 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 SDF2Q99470 211 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 VGLL1Q99990 258 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 R3HDMLQ9H3Y0 253 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 ZNF442Q9H7R0 627 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 INSIG2Q9Y5U4 225 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 MTCL1Q9Y4B5 1905 aaKnown RBP4.91□□□□□ -1.62
SCN1A-216ENST00000637968 EPPINO95925 133 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 GATA2P23769 480 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-216ENST00000637968 YPEL5P62699 121 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 ZFP36L1Q07352 338 aaKnown RBP4.91□□□□□ -1.62
SCN1A-216ENST00000637968 GAB4Q2WGN9 574 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 MEIG1Q5JSS6 88 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 DCAF12Q5T6F0 453 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 C18orf32Q8TCD1 76 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 CT55Q8WUE5 264 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 OR5P3Q8WZ94 311 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 SPACA5Q96QH8 159 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 PDFQ9HBH1 243 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 ZNF581Q9P0T4 197 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 TRAV5A0A0B4J249 113 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 CEACAM18A8MTB9 384 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 STATHP02808 62 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 IFITM1P13164 125 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 CXCL12P48061 93 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 SLC35B1P78383 322 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 DGAT2L6Q6ZPD8 337 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 TECRQ9NZ01 308 aaKnown RBP4.91□□□□□ -1.62
SCN1A-216ENST00000637968 B9D1Q9UPM9 204 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 ANKRD36A6QL64 1941 aa4.91□□□□□ -1.62
SCN1A-216ENST00000637968 LOC285556D6RIA3 1793 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 NPIPB15A6NHN6 443 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-216ENST00000637968 C1orf105O95561 183 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 KLKB1P03952 638 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 CFPP27918 469 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 TMEM240Q5SV17 173 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 PAAF1Q9BRP4 392 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 FBLN5Q9UBX5 448 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 PARP14Q460N5 1801 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 COL18A1P39060 1754 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 TRAV36DV7A0A075B6V5 113 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 A0A0B4J2E0 115 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 A0A1B0GX12 115 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 CEACAM4O75871 244 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 CSN1S1P47710 185 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 CLRN1P58418 232 aa4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms