RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CLEC12BQ2HXU8 276 aa15.01□□□□□ -0.01
CLN3-254ENST00000637050 DEFB113Q30KQ7 82 aa15.01□□□□□ -0.01
CLN3-254ENST00000637050 FAM71F2Q6NXP2 309 aa15.01□□□□□ -0.01
CLN3-254ENST00000637050 BEND2Q8NDZ0 799 aa15.01□□□□□ -0.01
CLN3-254ENST00000637050 ST6GALNAC6Q969X2 333 aa15.01□□□□□ -0.01
CLN3-254ENST00000637050 KPTNQ9Y664 436 aa15.01□□□□□ -0.01
CLN3-254ENST00000637050 DOPEY2Q9Y3R5 2298 aa15.01□□□□□ -0.01
CLN3-254ENST00000637050 FAM157AC9JC47 383 aa15□□□□□ -0.01
CLN3-254ENST00000637050 TOR1AO14656 332 aa15□□□□□ -0.01
CLN3-254ENST00000637050 RBFOX2O43251 390 aaKnown RBP eCLIP15□□□□□ -0.01
CLN3-254ENST00000637050 SLC25A16P16260 332 aa15□□□□□ -0.01
CLN3-254ENST00000637050 PRRX1P54821 245 aa15□□□□□ -0.01
CLN3-254ENST00000637050 LSM10Q969L4 123 aaKnown RBP15□□□□□ -0.01
CLN3-254ENST00000637050 TMEM186Q96B77 213 aa15□□□□□ -0.01
CLN3-254ENST00000637050 UNKLQ9H9P5 680 aaKnown RBP15□□□□□ -0.01
CLN3-254ENST00000637050 MMP26Q9NRE1 261 aa15□□□□□ -0.01
CLN3-254ENST00000637050 COMMD9Q9P000 198 aa15□□□□□ -0.01
CLN3-254ENST00000637050 PRELID3BQ9Y3B1 194 aa15□□□□□ -0.01
CLN3-254ENST00000637050 TACC2O95359 2948 aa15□□□□□ -0.01
CLN3-254ENST00000637050 KIR2DS2P43631 304 aa15□□□□□ -0.01
CLN3-254ENST00000637050 ZNF816Q0VGE8 651 aaPredicted RBP15□□□□□ -0.01
CLN3-254ENST00000637050 HLA-DRB5Q30154 266 aa15□□□□□ -0.01
CLN3-254ENST00000637050 ZNF383Q8NA42 475 aa15□□□□□ -0.01
CLN3-254ENST00000637050 OR13D1Q8NGV5 346 aa15□□□□□ -0.01
CLN3-254ENST00000637050 MBD6Q96DN6 1003 aa15□□□□□ -0.01
CLN3-254ENST00000637050 SIRPDQ9H106 197 aa15□□□□□ -0.01
CLN3-254ENST00000637050 GSKIPQ9P0R6 139 aa15□□□□□ -0.01
CLN3-254ENST00000637050 ARID1AO14497 2285 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 A0A0G2JRQ6 117 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 FCGR3BO75015 233 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 S1PR2O95136 353 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 IGKV1-5P01602 117 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 CT45A6P0DMU7 189 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 CT45A5P0DMU8 189 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 CT45A7P0DMV0 189 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 PSMB6P28072 239 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 LRRC37A5PQ49AS3 106 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 OR11H6Q8NGC7 330 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 SPIN2AQ99865 258 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 SPIN2BQ9BPZ2 258 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 PLEKHA2Q9HB19 425 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 SIRT7Q9NRC8 400 aa14.99□□□□□ -0.01
CLN3-254ENST00000637050 HELZ2Q9BYK8 2649 aaKnown RBP14.98□□□□□ -0.01
CLN3-254ENST00000637050 CELSR2Q9HCU4 2923 aa14.98□□□□□ -0.01
CLN3-254ENST00000637050 ARHGAP32A7KAX9 2087 aa14.98□□□□□ -0.01
CLN3-254ENST00000637050 MPC2O95563 127 aa14.98□□□□□ -0.01
CLN3-254ENST00000637050 SLC25A6P12236 298 aa14.98□□□□□ -0.01
CLN3-254ENST00000637050 COX7A1P24310 79 aa14.98□□□□□ -0.01
CLN3-254ENST00000637050 IL3RAP26951 378 aa14.98□□□□□ -0.01
CLN3-254ENST00000637050 PRB3Q04118 309 aaPredicted RBP14.98□□□□□ -0.01
CLN3-254ENST00000637050 HCP5Q6MZN7 132 aa14.98□□□□□ -0.01
CLN3-254ENST00000637050 PNKDQ8N490 385 aa14.98□□□□□ -0.01
CLN3-254ENST00000637050 GPR146Q96CH1 333 aa14.98□□□□□ -0.01
CLN3-254ENST00000637050 HEXA-AS1Q9H8Q6 139 aa14.98□□□□□ -0.01
CLN3-254ENST00000637050 SPG11Q96JI7 2443 aa14.98□□□□□ -0.01
CLN3-254ENST00000637050 HPRT1P00492 218 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 SLC25A4P12235 298 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 SMUG1Q53HV7 270 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 C11orf87Q6NUJ2 197 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 OR4D5Q8NGN0 318 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 GRPEL2Q8TAA5 225 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 HMSDA8MTL9 139 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 BUB1B-PAK6H3BSN5 160 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 ATG12O94817 140 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 P0C879 139 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 MMP9P14780 707 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 USF1P22415 310 aaPredicted RBP14.97□□□□□ -0.01
CLN3-254ENST00000637050 AKR1C2P52895 323 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 RAB32Q13637 225 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 DIAPH2-AS1Q14236 149 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 LAMTOR1Q6IAA8 161 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 VMO1Q7Z5L0 202 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 OR4P4Q8NGL7 312 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 OR4S2Q8NH73 311 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 RRNAD1Q96FB5 475 aaKnown RBP14.97□□□□□ -0.01
CLN3-254ENST00000637050 MRPL20Q9BYC9 149 aaKnown RBP14.97□□□□□ -0.01
CLN3-254ENST00000637050 MMP24Q9Y5R2 645 aa14.97□□□□□ -0.01
CLN3-254ENST00000637050 FXYD6-FXYD2A0A087WZ82 144 aa14.96□□□□□ -0.01
CLN3-254ENST00000637050 A0A096LNT2 108 aa14.96□□□□□ -0.01
CLN3-254ENST00000637050 A0A1B0GU03 582 aa14.96□□□□□ -0.01
CLN3-254ENST00000637050 KRASP01116 189 aa14.96□□□□□ -0.01
CLN3-254ENST00000637050 G6PCP35575 357 aa14.96□□□□□ -0.01
CLN3-254ENST00000637050 DVL1P1P54792 670 aaPredicted RBP14.96□□□□□ -0.01
CLN3-254ENST00000637050 FAM219AQ8IW50 185 aa14.96□□□□□ -0.01
CLN3-254ENST00000637050 C9orf62Q8N4C0 152 aa14.96□□□□□ -0.01
CLN3-254ENST00000637050 RNASE11Q8TAA1 199 aaKnown RBP14.96□□□□□ -0.01
CLN3-254ENST00000637050 RNF126Q9BV68 326 aa14.96□□□□□ -0.01
CLN3-254ENST00000637050 PRELID1Q9Y255 219 aa14.96□□□□□ -0.01
CLN3-254ENST00000637050 AMMECR1Q9Y4X0 333 aaPredicted RBP14.96□□□□□ -0.01
CLN3-254ENST00000637050 INSIG2Q9Y5U4 225 aa14.96□□□□□ -0.01
CLN3-254ENST00000637050 ODF3BA8MYP8 253 aa14.95□□□□□ -0.02
CLN3-254ENST00000637050 H0YIZ8 118 aa14.95□□□□□ -0.02
CLN3-254ENST00000637050 PITX3O75364 302 aa14.95□□□□□ -0.02
CLN3-254ENST00000637050 MBPP02686 304 aaPredicted RBP14.95□□□□□ -0.02
CLN3-254ENST00000637050 TAGLNQ01995 201 aaKnown RBP14.95□□□□□ -0.02
CLN3-254ENST00000637050 TMEM65Q6PI78 240 aa14.95□□□□□ -0.02
CLN3-254ENST00000637050 Q6ZRM9 215 aa14.95□□□□□ -0.02
CLN3-254ENST00000637050 OR5AN1Q8NGI8 311 aa14.95□□□□□ -0.02
CLN3-254ENST00000637050 THAP6Q8TBB0 222 aa14.95□□□□□ -0.02
CLN3-254ENST00000637050 NABP2Q9BQ15 211 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms