RNA–Protein interactions for RNA: ENST00000636610.1

CACNA1A-228, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 3,011 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-228ENST00000636610 EDDM3BP56851 147 aa11.77□□□□□ -0.52
CACNA1A-228ENST00000636610 FAM3BP58499 235 aaPredicted RBP11.77□□□□□ -0.52
CACNA1A-228ENST00000636610 CST9LP1Q5W188 147 aa11.77□□□□□ -0.52
CACNA1A-228ENST00000636610 PATZ1Q9HBE1 687 aaKnown RBP11.77□□□□□ -0.52
CACNA1A-228ENST00000636610 A0A087WWC5 75 aa11.77□□□□□ -0.53
CACNA1A-228ENST00000636610 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.77□□□□□ -0.53
CACNA1A-228ENST00000636610 PTBP3O95758 552 aaKnown RBP11.77□□□□□ -0.53
CACNA1A-228ENST00000636610 CYB5R3P00387 301 aaPredicted RBP11.77□□□□□ -0.53
CACNA1A-228ENST00000636610 HOXB1P14653 301 aaPredicted RBP11.77□□□□□ -0.53
CACNA1A-228ENST00000636610 BRWD1-AS2P59051 145 aa11.77□□□□□ -0.53
CACNA1A-228ENST00000636610 TGFBR3Q03167 851 aa11.77□□□□□ -0.53
CACNA1A-228ENST00000636610 OR13A1Q8NGR1 328 aa11.77□□□□□ -0.53
CACNA1A-228ENST00000636610 TREM2Q9NZC2 230 aa11.77□□□□□ -0.53
CACNA1A-228ENST00000636610 DUSP13Q9UII6 198 aa11.77□□□□□ -0.53
CACNA1A-228ENST00000636610 MLNRO43193 412 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 GZMHP20718 246 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 MEF2BQ02080 365 aaPredicted RBP11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 P2RY6Q15077 328 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 VWA1Q6PCB0 445 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 DTD1Q8TEA8 209 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 LSM10Q969L4 123 aaKnown RBP11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 GUCD1Q96NT3 240 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 WASF3Q9UPY6 502 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 TNRC6AQ8NDV7 1962 aaKnown RBP11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 NBASA2RRP1 2371 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 IGHV3OR15-7A0A075B7D8 119 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 SEC14L6B5MCN3 397 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 SOX8P57073 446 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 ZNF766Q5HY98 468 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 OR8G5Q8NG78 346 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 SNIP1Q8TAD8 396 aaKnown RBP11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 NANOS1Q8WY41 292 aaKnown RBP11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 GTF3AQ92664 365 aaKnown RBP11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 RAB24Q969Q5 203 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 PACRGQ96M98 296 aaPredicted RBP11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 DERL1Q9BUN8 251 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 PKIBQ9C010 78 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 ZMAT5Q9UDW3 170 aaKnown RBP11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 POLDIP2Q9Y2S7 368 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 PHOX2AO14813 284 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 TIMM8AO60220 97 aaPredicted RBP11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 CD46P15529 392 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 SRSF7Q16629 238 aaKnown RBP eCLIP11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 UTF1Q5T230 341 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 VHLLQ6RSH7 139 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 H2BFWTQ7Z2G1 175 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 MRGPRGQ86SM5 289 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 LRP11Q86VZ4 500 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 OR4X1Q8NH49 305 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 PARLQ9H300 379 aa11.76□□□□□ -0.53
CACNA1A-228ENST00000636610 ZFHX2Q9C0A1 2572 aaPredicted RBP11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 A0A1B0GUS0 222 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 ZNF705GA8MUZ8 300 aaPredicted RBP11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 COL10A1Q03692 680 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 TMEM241Q24JQ0 296 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 FAM201AQ5SY85 155 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 HES3Q5TGS1 186 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 DEFB123Q8N688 67 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 OR10P1Q8NGE3 313 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 COQ2Q96H96 371 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 MEGF10Q96KG7 1140 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 SPRY4Q9C004 299 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 GP6Q9HCN6 339 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 SIRT7Q9NRC8 400 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 KLF13Q9Y2Y9 288 aaPredicted RBP11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 KALRNO60229 2985 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 HOXA6P31267 233 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 MAS1LP35410 378 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 DEFA6Q01524 100 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 BSXQ3C1V8 233 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 ZNF66Q6ZN08 573 aa11.75□□□□□ -0.53
CACNA1A-228ENST00000636610 LRRC30A6NM36 301 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 H7BYZ3 331 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 NKX2-8O15522 239 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 FCGR3BO75015 233 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 PSMB3P49720 205 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 ERVK11-1P61568 191 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 ZNF709Q8N972 641 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 QTRT1Q9BXR0 403 aaKnown RBP11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 TACC2O95359 2948 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 TMEM30CPA0ZSE6 113 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 RPL23P62829 140 aaKnown RBP11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 FOXF2Q12947 444 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 MRPL49Q13405 166 aaKnown RBP11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 MBD3L1Q8WWY6 194 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 HINT2Q9BX68 163 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 FUT9Q9Y231 359 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 ACACAQ13085 2346 aa11.74□□□□□ -0.53
CACNA1A-228ENST00000636610 TRBV6-6A0A0A6YYG2 114 aa11.73□□□□□ -0.53
CACNA1A-228ENST00000636610 GALR1P47211 349 aa11.73□□□□□ -0.53
CACNA1A-228ENST00000636610 LINC00596Q86U02 117 aa11.73□□□□□ -0.53
CACNA1A-228ENST00000636610 ZNF645Q8N7E2 425 aa11.73□□□□□ -0.53
CACNA1A-228ENST00000636610 HIST1H2BLQ99880 126 aa11.73□□□□□ -0.53
CACNA1A-228ENST00000636610 PRDM13Q9H4Q3 707 aa11.73□□□□□ -0.53
CACNA1A-228ENST00000636610 GNG12Q9UBI6 72 aa11.73□□□□□ -0.53
CACNA1A-228ENST00000636610 TRAV1-1A0A0B4J248 108 aa11.73□□□□□ -0.53
CACNA1A-228ENST00000636610 IFNA1P01562 189 aa11.73□□□□□ -0.53
CACNA1A-228ENST00000636610 IFNA10P01566 189 aa11.73□□□□□ -0.53
CACNA1A-228ENST00000636610 OPN1MWP04001 364 aa11.73□□□□□ -0.53
CACNA1A-228ENST00000636610 OPN1MW2P0DN77 364 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms