RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 WASHC3Q9Y3C0 194 aa14.42□□□□□ -0.1
CLN3-243ENST00000635973 IGKV1D-13A0A0B4J2D9 117 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 H0YJW9 148 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 GABARAPH6UMI1 98 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 TUSC2O75896 110 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 SLC22A5O76082 557 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 PPYP01298 95 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 IGKV1-13P0DP09 117 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 MC5RP33032 325 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 BLCAPP62952 87 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 DGCR2P98153 550 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 ACTBL2Q562R1 376 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 TMEM17Q86X19 198 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 SECTM1Q8WVN6 248 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 RBMXL1Q96E39 390 aaKnown RBP14.41□□□□□ -0.1
CLN3-243ENST00000635973 ZNF702PQ9H963 129 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 KLK11Q9UBX7 282 aa14.41□□□□□ -0.1
CLN3-243ENST00000635973 FGF16O43320 207 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 THBS3P49746 956 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 TSPAN5P62079 268 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 CBX3Q13185 183 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 DYRK1AQ13627 763 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 MMDQ15546 238 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 OVCH2Q7RTZ1 564 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 Q8N6K4 173 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 C5orf56Q8N8D9 126 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 ZNF383Q8NA42 475 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 OR8H1Q8NGG4 311 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 SMIM4Q8WVI0 70 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 GIMAP1Q8WWP7 306 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 C5orf30Q96GV9 206 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 ZNF2Q9BSG1 426 aaPredicted RBP14.4□□□□□ -0.1
CLN3-243ENST00000635973 SLC5A7Q9GZV3 580 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 MTFP1Q9UDX5 166 aa14.4□□□□□ -0.1
CLN3-243ENST00000635973 NOTCH1P46531 2555 aa14.39□□□□□ -0.11
CLN3-243ENST00000635973 SH2D7A6NKC9 451 aaPredicted RBP14.39□□□□□ -0.11
CLN3-243ENST00000635973 PROP1O75360 226 aa14.39□□□□□ -0.11
CLN3-243ENST00000635973 FBXO24O75426 580 aa14.39□□□□□ -0.11
CLN3-243ENST00000635973 VDAC2P45880 294 aaPredicted RBP14.39□□□□□ -0.11
CLN3-243ENST00000635973 LYSMD2Q8IV50 215 aa14.39□□□□□ -0.11
CLN3-243ENST00000635973 OR5AN1Q8NGI8 311 aa14.39□□□□□ -0.11
CLN3-243ENST00000635973 OR6F1Q8NGZ6 308 aa14.39□□□□□ -0.11
CLN3-243ENST00000635973 ADTRPQ96IZ2 230 aa14.39□□□□□ -0.11
CLN3-243ENST00000635973 RASL11BQ9BPW5 248 aa14.39□□□□□ -0.11
CLN3-243ENST00000635973 SLC35D1Q9NTN3 355 aa14.39□□□□□ -0.11
CLN3-243ENST00000635973 KIAA1456Q9P272 454 aa14.39□□□□□ -0.11
CLN3-243ENST00000635973 RBMX2Q9Y388 322 aaKnown RBP14.39□□□□□ -0.11
CLN3-243ENST00000635973 PRKDCP78527 4128 aaKnown RBP14.38□□□□□ -0.11
CLN3-243ENST00000635973 M0QYG6 137 aa14.38□□□□□ -0.11
CLN3-243ENST00000635973 CTDSPLO15194 276 aa14.38□□□□□ -0.11
CLN3-243ENST00000635973 AMY1AP04745 511 aa14.38□□□□□ -0.11
CLN3-243ENST00000635973 AMY2AP04746 511 aa14.38□□□□□ -0.11
CLN3-243ENST00000635973 IFNA6P05013 189 aa14.38□□□□□ -0.11
CLN3-243ENST00000635973 TBPP20226 339 aa14.38□□□□□ -0.11
CLN3-243ENST00000635973 LINC00205P59089 165 aa14.38□□□□□ -0.11
CLN3-243ENST00000635973 TAS2R19P59542 299 aa14.38□□□□□ -0.11
CLN3-243ENST00000635973 SSBP1Q04837 148 aaKnown RBP14.38□□□□□ -0.11
CLN3-243ENST00000635973 RTL8BQ17RB0 113 aa14.38□□□□□ -0.11
CLN3-243ENST00000635973 RNASE10Q5GAN6 216 aaKnown RBP14.38□□□□□ -0.11
CLN3-243ENST00000635973 PDPNQ86YL7 162 aa14.38□□□□□ -0.11
CLN3-243ENST00000635973 NBR2O15453 112 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 OPN1MWP04001 364 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 OPN1MW2P0DN77 364 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 OPN1MW3P0DN78 364 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 F2RL1P55085 397 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 RPS16P62249 146 aaKnown RBP14.37□□□□□ -0.11
CLN3-243ENST00000635973 TAGLNQ01995 201 aaKnown RBP14.37□□□□□ -0.11
CLN3-243ENST00000635973 PLGLAQ15195 96 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 NSUN5P1Q3KNT7 163 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 TMEM95Q3KNT9 176 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 PYDC2Q56P42 97 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 SPANXN2Q5MJ10 180 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 HIST2H2BDQ6DRA6 164 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 Q6ZS46 218 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 KCTD9Q7L273 389 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 Q8N2B8 174 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 Q8N9W7 124 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 BORCS5Q969J3 196 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 CCL28Q9NRJ3 127 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 TAS2R8Q9NYW2 309 aa14.37□□□□□ -0.11
CLN3-243ENST00000635973 TNFSF12O43508 249 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 CD3DP04234 171 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 RRASP10301 218 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 CNTFRP26992 372 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 DUTP33316 252 aaKnown RBP14.36□□□□□ -0.11
CLN3-243ENST00000635973 VAX1Q5SQQ9 334 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 DHRS11Q6UWP2 260 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 TMEM229BQ8NBD8 167 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 BVESQ8NE79 360 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 TCTEX1D2Q8WW35 142 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 MOB3AQ96BX8 217 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 FLYWCH2Q96CP2 140 aaKnown RBP14.36□□□□□ -0.11
CLN3-243ENST00000635973 RITA1Q96K30 269 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 HSD17B10Q99714 261 aaKnown RBP14.36□□□□□ -0.11
CLN3-243ENST00000635973 TINAGL1Q9GZM7 467 aaPredicted RBP14.36□□□□□ -0.11
CLN3-243ENST00000635973 LIN7CQ9NUP9 197 aaKnown RBP14.36□□□□□ -0.11
CLN3-243ENST00000635973 PRELID3BQ9Y3B1 194 aa14.36□□□□□ -0.11
CLN3-243ENST00000635973 PLXNB1O43157 2135 aa14.35□□□□□ -0.11
CLN3-243ENST00000635973 IGKV1-16P04430 117 aa14.35□□□□□ -0.11
CLN3-243ENST00000635973 MSMO1Q15800 293 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms