RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 ZNF439Q8NDP4 499 aa7.79□□□□□ -1.16
PDLIM5-223ENST00000627587 RBPMSQ93062 196 aaKnown RBP7.79□□□□□ -1.16
PDLIM5-223ENST00000627587 LEAP2Q969E1 77 aa7.79□□□□□ -1.16
PDLIM5-223ENST00000627587 NEIL1Q96FI4 390 aaPredicted RBP7.79□□□□□ -1.16
PDLIM5-223ENST00000627587 ABHD14BQ96IU4 210 aa7.79□□□□□ -1.16
PDLIM5-223ENST00000627587 ABHD14AQ9BUJ0 271 aa7.79□□□□□ -1.16
PDLIM5-223ENST00000627587 RPUSD1Q9UJJ7 312 aaKnown RBP7.79□□□□□ -1.16
PDLIM5-223ENST00000627587 HSPB11Q9Y547 144 aa7.79□□□□□ -1.16
PDLIM5-223ENST00000627587 FXYD6-FXYD2A0A087WZ82 144 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 A0A096LNT2 108 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 DUXBA0A1W2PPF3 345 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 HMSDA8MTL9 139 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 NDUFS8O00217 210 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 IGKV1-39P01597 117 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 IGHV3-7P01780 117 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 IGKV1D-39P04432 117 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 ZNF16P17020 682 aaPredicted RBP7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 USF1P22415 310 aaPredicted RBP7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 PSMB6P28072 239 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 GPR6P46095 362 aaPredicted RBP7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 GPR12P47775 334 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 LINC00205P59089 165 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 RPL30P62888 115 aaKnown RBP7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 IAH1Q2TAA2 248 aaPredicted RBP7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 ZNF585BQ52M93 769 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 PRAMEF5Q5TYX0 476 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 C11orf87Q6NUJ2 197 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 HEPN1Q6WQI6 88 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 IQCF2Q8IXL9 164 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 C11orf42Q8N5U0 333 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 C10orf105Q8TEF2 133 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 IL22RA2Q969J5 263 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 RAB39BQ96DA2 213 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 IFI27L2Q9H2X8 130 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 SDHAF2Q9NX18 166 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 GSKIPQ9P0R6 139 aa7.78□□□□□ -1.16
PDLIM5-223ENST00000627587 H0YIZ8 118 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 MPC2O95563 127 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 CXCL2P19875 107 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 HNF1AP20823 631 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 Q3ZCU0 254 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 CT45A1Q5HYN5 189 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 ZNF66Q6ZN08 573 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 ODF3L1Q8IXM7 274 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 SELENOHQ8IZQ5 122 aaKnown RBP7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 CT45A3Q8NHU0 189 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 THAP6Q8TBB0 222 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 HSD17B10Q99714 261 aaKnown RBP7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 A0A1W2PPH5 198 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 LINC00473A8K010 186 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 ARPC5O15511 151 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 PET100P0DJ07 73 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 SLC25A4P12235 298 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 RPA2P15927 270 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 VDAC1P21796 283 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 GNG10P50151 68 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 PDLIM4P50479 330 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 WDR25Q64LD2 544 aaPredicted RBP7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 BTNL3Q6UXE8 466 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 ZNF546Q86UE3 836 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 TCTEX1D1Q8N7M0 179 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 ZBTB8BQ8NAP8 495 aaPredicted RBP7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 TCTEX1D2Q8WW35 142 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 SPIN2AQ99865 258 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 SPIN2BQ9BPZ2 258 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 ZNF251Q9BRH9 671 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 RNF126Q9BV68 326 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 PATZ1Q9HBE1 687 aaKnown RBP7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 ZNRD1Q9P1U0 126 aa7.77□□□□□ -1.17
PDLIM5-223ENST00000627587 A0A0G2JRQ6 117 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 A0A1W2PPE3 182 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 L7N2F9 121 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 RAB29O14966 203 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 RAMP3O60896 148 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 IGHV4-31P0DP07 118 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 SRD5A1P18405 259 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 C4BPBP20851 252 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 GNB2P62879 340 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 KRTAP24-1Q3LI83 254 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 ESCO2Q56NI9 601 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 NMSQ5H8A3 153 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 THOC7Q6I9Y2 204 aaKnown RBP7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 RNASE11Q8TAA1 199 aaKnown RBP7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 HEXA-AS1Q9H8Q6 139 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 GAB2Q9UQC2 676 aa7.76□□□□□ -1.17
PDLIM5-223ENST00000627587 F5H0A9 414 aaPredicted RBP7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 AKR1C2P52895 323 aa7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 S100A10P60903 97 aa7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 RAB32Q13637 225 aa7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 RPL39P5Q59GN2 51 aa7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 TMEM65Q6PI78 240 aa7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 SLC25A48Q6ZT89 311 aaKnown RBP7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 SPAG16Q8N0X2 631 aa7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 LYG1Q8N1E2 194 aa7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 ZNF525Q8N782 197 aa7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 CD300LFQ8TDQ1 290 aa7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 PIMREGQ9BSJ6 248 aa7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 C19orf24Q9BVV8 132 aa7.75□□□□□ -1.17
PDLIM5-223ENST00000627587 MFFQ9GZY8 342 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms