RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 IAPPP10997 89 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 ATP6V0CP27449 155 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 UNQ6494/PRO21346Q6UXR6 183 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 COMMD1Q8N668 190 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 TMEM217Q8N7C4 229 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 SH3BGRL3Q9H299 93 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 RBKSQ9H477 322 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 SLC25A10Q9UBX3 287 aaPredicted RBP18.22■□□□□ 0.51
PNKP-220ENST00000627232 PRELID3BQ9Y3B1 194 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 PIEZO2Q9H5I5 2752 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 USF3Q68DE3 2245 aa18.22■□□□□ 0.51
PNKP-220ENST00000627232 B8ZZF3 427 aa18.21■□□□□ 0.51
PNKP-220ENST00000627232 UMAD1C9J7I0 102 aa18.21■□□□□ 0.51
PNKP-220ENST00000627232 M6PRP20645 277 aa18.21■□□□□ 0.51
PNKP-220ENST00000627232 CAMLGP49069 296 aa18.21■□□□□ 0.51
PNKP-220ENST00000627232 CT45A1Q5HYN5 189 aa18.21■□□□□ 0.51
PNKP-220ENST00000627232 CT45A3Q8NHU0 189 aa18.21■□□□□ 0.51
PNKP-220ENST00000627232 R3HDM4Q96D70 268 aa18.21■□□□□ 0.51
PNKP-220ENST00000627232 MAP1BP46821 2468 aaKnown RBP18.21■□□□□ 0.5
PNKP-220ENST00000627232 TMEM218A2RU14 115 aa18.2■□□□□ 0.5
PNKP-220ENST00000627232 DLL1O00548 723 aa18.2■□□□□ 0.5
PNKP-220ENST00000627232 SLC31A2O15432 143 aa18.2■□□□□ 0.5
PNKP-220ENST00000627232 NDUFB7P17568 137 aa18.2■□□□□ 0.5
PNKP-220ENST00000627232 TMEM267Q0VDI3 215 aaPredicted RBP18.2■□□□□ 0.5
PNKP-220ENST00000627232 CCL17Q92583 94 aa18.2■□□□□ 0.5
PNKP-220ENST00000627232 CISD1Q9NZ45 108 aaKnown RBP18.2■□□□□ 0.5
PNKP-220ENST00000627232 RPUSD1Q9UJJ7 312 aaKnown RBP18.2■□□□□ 0.5
PNKP-220ENST00000627232 BSNQ9UPA5 3926 aa18.2■□□□□ 0.5
PNKP-220ENST00000627232 POLEQ07864 2286 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 MARCH11A6NNE9 402 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 H3BP45 60 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 FCGR3BO75015 233 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 SCO1O75880 301 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 IFNA5P01569 189 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 ID4P47928 161 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 HBG1P69891 147 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 HBG2P69892 147 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 RPL39P5Q59GN2 51 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 OR2G3Q8NGZ4 309 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 DDB2Q92466 427 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 ADTRPQ96IZ2 230 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 GAL3ST2Q9H3Q3 398 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 C19orf12Q9NSK7 152 aa18.19■□□□□ 0.5
PNKP-220ENST00000627232 PRH1P02810 166 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 THBS3P49746 956 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 LINC00205P59089 165 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 AARDQ4LEZ3 155 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 TMEM182Q6ZP80 229 aaPredicted RBP18.18■□□□□ 0.5
PNKP-220ENST00000627232 NARS2Q96I59 477 aaKnown RBP18.18■□□□□ 0.5
PNKP-220ENST00000627232 CIB3Q96Q77 187 aaPredicted RBP18.18■□□□□ 0.5
PNKP-220ENST00000627232 S1PR3Q99500 378 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 KAAG1Q9UBP8 84 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 TLN1Q9Y490 2541 aaKnown RBP18.18■□□□□ 0.5
PNKP-220ENST00000627232 NDUFA2O43678 99 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 LY86O95711 162 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 TSPAN15O95858 294 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 PLAUP00749 431 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 NFYBP25208 207 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 GRNP28799 593 aaKnown RBP18.18■□□□□ 0.5
PNKP-220ENST00000627232 TMEM14EPQ6UXP3 125 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 CA5BP1Q8WTZ4 195 aa18.18■□□□□ 0.5
PNKP-220ENST00000627232 PARD6GQ9BYG4 376 aaPredicted RBP18.18■□□□□ 0.5
PNKP-220ENST00000627232 ATMQ13315 3056 aa18.17■□□□□ 0.5
PNKP-220ENST00000627232 IGHV1-69-2A0A0G2JMI3 117 aa18.17■□□□□ 0.5
PNKP-220ENST00000627232 NDUFB3O43676 98 aa18.17■□□□□ 0.5
PNKP-220ENST00000627232 APOC3P02656 99 aa18.17■□□□□ 0.5
PNKP-220ENST00000627232 RPL31P62899 125 aaKnown RBP18.17■□□□□ 0.5
PNKP-220ENST00000627232 MRPS11P82912 194 aaKnown RBP18.17■□□□□ 0.5
PNKP-220ENST00000627232 LRRC10Q5BKY1 277 aa18.17■□□□□ 0.5
PNKP-220ENST00000627232 ZNF251Q9BRH9 671 aa18.17■□□□□ 0.5
PNKP-220ENST00000627232 TREM1Q9NP99 234 aa18.17■□□□□ 0.5
PNKP-220ENST00000627232 SAA2-SAA4A0A096LPE2 208 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 SIAH2O43255 324 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 ZG16O60844 167 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 IGHV3-7P01780 117 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 OR8U8P0C7N1 319 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 METTL15P1P0C7V9 234 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 SAA2P0DJI9 122 aaPredicted RBP18.16■□□□□ 0.5
PNKP-220ENST00000627232 DAOP14920 347 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 ERVK-16P61578 105 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 SRSF3P84103 164 aaKnown RBP18.16■□□□□ 0.5
PNKP-220ENST00000627232 ZNF672Q499Z4 452 aaPredicted RBP18.16■□□□□ 0.5
PNKP-220ENST00000627232 SPANXN5Q5MJ07 72 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 C10orf91Q5T1B1 145 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 UTF1Q5T230 341 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 PRAMEF5Q5TYX0 476 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 SLC25A48Q6ZT89 311 aaKnown RBP18.16■□□□□ 0.5
PNKP-220ENST00000627232 HAPLN4Q86UW8 402 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 ZNF525Q8N782 197 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 OR4S2Q8NH73 311 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 LEAP2Q969E1 77 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 TMEM204Q9BSN7 226 aa18.16■□□□□ 0.5
PNKP-220ENST00000627232 ARFGEF3Q5TH69 2177 aa18.15■□□□□ 0.5
PNKP-220ENST00000627232 CD5P06127 495 aa18.15■□□□□ 0.5
PNKP-220ENST00000627232 NQO2P16083 231 aa18.15■□□□□ 0.5
PNKP-220ENST00000627232 LOXP28300 417 aaPredicted RBP18.15■□□□□ 0.5
PNKP-220ENST00000627232 ZNF616Q08AN1 781 aa18.15■□□□□ 0.5
PNKP-220ENST00000627232 ARL16Q0P5N6 197 aa18.15■□□□□ 0.5
PNKP-220ENST00000627232 ZNF273Q14593 569 aa18.15■□□□□ 0.5
PNKP-220ENST00000627232 DPPA3Q6W0C5 159 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms