RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ZDHHC16Q969W1 377 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 CLN8Q9UBY8 286 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 NDRG3Q9UGV2 375 aa8.85□□□□□ -0.99
CUX1-221ENST00000622516 ODAMA1E959 279 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 C15orf65H3BRN8 121 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 PROP1O75360 226 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 FBP1P09467 338 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 DAOP14920 347 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 CD40P25942 277 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 SULT1A1P50225 295 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 HAGHQ16775 308 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 RPL39P5Q59GN2 51 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 HAPLN4Q86UW8 402 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 SFT2D1Q8WV19 159 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 AGMATQ9BSE5 352 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 SFXN3Q9BWM7 321 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 SCRT1Q9BWW7 348 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 VSIRQ9H7M9 311 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 CARHSP1Q9Y2V2 147 aaKnown RBP8.84□□□□□ -0.99
CUX1-221ENST00000622516 DYSFO75923 2080 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 TNCP24821 2201 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 IFNL4K9M1U5 179 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 PRRG2O14669 202 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 SPINT2O43291 252 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 UBE2KP61086 200 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 KRTCAP3Q53RY4 240 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 NCR3LG1Q68D85 454 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 GFRALQ6UXV0 394 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 LSM10Q969L4 123 aaKnown RBP8.84□□□□□ -0.99
CUX1-221ENST00000622516 ATP5SQ99766 215 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 GCM1Q9NP62 436 aa8.84□□□□□ -0.99
CUX1-221ENST00000622516 CD200P41217 278 aa8.83□□□□□ -1
CUX1-221ENST00000622516 CASP6P55212 293 aa8.83□□□□□ -1
CUX1-221ENST00000622516 RAB40CQ96S21 281 aa8.83□□□□□ -1
CUX1-221ENST00000622516 COL25A1Q9BXS0 654 aaPredicted RBP8.83□□□□□ -1
CUX1-221ENST00000622516 IGHV1-46P01743 117 aa8.83□□□□□ -1
CUX1-221ENST00000622516 TUBG1P23258 451 aa8.83□□□□□ -1
CUX1-221ENST00000622516 SPCS3P61009 180 aa8.83□□□□□ -1
CUX1-221ENST00000622516 TNFAIP6P98066 277 aaPredicted RBP8.83□□□□□ -1
CUX1-221ENST00000622516 TLE1Q04724 770 aa8.83□□□□□ -1
CUX1-221ENST00000622516 DMRTC2Q8IXT2 367 aaPredicted RBP8.83□□□□□ -1
CUX1-221ENST00000622516 FAM169BQ8N8A8 192 aa8.83□□□□□ -1
CUX1-221ENST00000622516 CD300LFQ8TDQ1 290 aa8.83□□□□□ -1
CUX1-221ENST00000622516 CCL13Q99616 98 aa8.83□□□□□ -1
CUX1-221ENST00000622516 RBKSQ9H477 322 aa8.83□□□□□ -1
CUX1-221ENST00000622516 TUBG2Q9NRH3 451 aa8.83□□□□□ -1
CUX1-221ENST00000622516 WSB1Q9Y6I7 421 aa8.83□□□□□ -1
CUX1-221ENST00000622516 TRBV23-1A0A0A0MS06 115 aa8.82□□□□□ -1
CUX1-221ENST00000622516 SLC31A2O15432 143 aa8.82□□□□□ -1
CUX1-221ENST00000622516 FCGR3BO75015 233 aa8.82□□□□□ -1
CUX1-221ENST00000622516 GYPAP02724 150 aa8.82□□□□□ -1
CUX1-221ENST00000622516 H2AFB1P0C5Y9 115 aa8.82□□□□□ -1
CUX1-221ENST00000622516 PTAFRP25105 342 aa8.82□□□□□ -1
CUX1-221ENST00000622516 OR2B8PP59922 312 aa8.82□□□□□ -1
CUX1-221ENST00000622516 BAXQ07812 192 aa8.82□□□□□ -1
CUX1-221ENST00000622516 ADAM5Q6NVV9 412 aa8.82□□□□□ -1
CUX1-221ENST00000622516 C1orf229Q6ZS94 237 aaPredicted RBP8.82□□□□□ -1
CUX1-221ENST00000622516 LURAP1Q96LR2 239 aa8.82□□□□□ -1
CUX1-221ENST00000622516 MMP24Q9Y5R2 645 aa8.82□□□□□ -1
CUX1-221ENST00000622516 ZG16O60844 167 aa8.82□□□□□ -1
CUX1-221ENST00000622516 SNRNP70P08621 437 aaKnown RBP8.82□□□□□ -1
CUX1-221ENST00000622516 GPR12P47775 334 aa8.82□□□□□ -1
CUX1-221ENST00000622516 TDGF1P3P51864 188 aa8.82□□□□□ -1
CUX1-221ENST00000622516 FGF8P55075 233 aaPredicted RBP8.82□□□□□ -1
CUX1-221ENST00000622516 EIF4EBP1Q13541 118 aaPredicted RBP8.82□□□□□ -1
CUX1-221ENST00000622516 AKR1C8PQ5T2L2 129 aa8.82□□□□□ -1
CUX1-221ENST00000622516 SPSB3Q6PJ21 355 aa8.82□□□□□ -1
CUX1-221ENST00000622516 FAM90A1Q86YD7 464 aa8.82□□□□□ -1
CUX1-221ENST00000622516 FAM216BQ8N7L0 139 aa8.82□□□□□ -1
CUX1-221ENST00000622516 ZNRD1Q9P1U0 126 aa8.82□□□□□ -1
CUX1-221ENST00000622516 ANKHD1Q8IWZ3 2542 aaKnown RBP8.82□□□□□ -1
CUX1-221ENST00000622516 IGLV3-9A0A075B6K5 115 aa8.82□□□□□ -1
CUX1-221ENST00000622516 RNF212BA8MTL3 300 aa8.82□□□□□ -1
CUX1-221ENST00000622516 M0R036 132 aa8.82□□□□□ -1
CUX1-221ENST00000622516 S100A9P06702 114 aaKnown RBP8.82□□□□□ -1
CUX1-221ENST00000622516 ELLP55199 621 aaPredicted RBP8.82□□□□□ -1
CUX1-221ENST00000622516 TNFRSF9Q07011 255 aa8.82□□□□□ -1
CUX1-221ENST00000622516 TBR1Q16650 682 aa8.82□□□□□ -1
CUX1-221ENST00000622516 MORN2Q502X0 79 aa8.82□□□□□ -1
CUX1-221ENST00000622516 ZNF251Q9BRH9 671 aa8.82□□□□□ -1
CUX1-221ENST00000622516 STRAPQ9Y3F4 350 aaKnown RBP8.82□□□□□ -1
CUX1-221ENST00000622516 UBE2L5PA0A1B0GUS4 154 aa8.81□□□□□ -1
CUX1-221ENST00000622516 DPRXA6NFQ7 191 aa8.81□□□□□ -1
CUX1-221ENST00000622516 C16orf97H3BN30 126 aa8.81□□□□□ -1
CUX1-221ENST00000622516 M0R1X1 148 aa8.81□□□□□ -1
CUX1-221ENST00000622516 HMGB3O15347 200 aaKnown RBP8.81□□□□□ -1
CUX1-221ENST00000622516 CLDN14O95500 239 aa8.81□□□□□ -1
CUX1-221ENST00000622516 LHBP01229 141 aa8.81□□□□□ -1
CUX1-221ENST00000622516 IFNA5P01569 189 aa8.81□□□□□ -1
CUX1-221ENST00000622516 IFNA4P05014 189 aa8.81□□□□□ -1
CUX1-221ENST00000622516 SLC25A6P12236 298 aa8.81□□□□□ -1
CUX1-221ENST00000622516 MMP9P14780 707 aa8.81□□□□□ -1
CUX1-221ENST00000622516 RAB5CP51148 216 aa8.81□□□□□ -1
CUX1-221ENST00000622516 BSPH1Q075Z2 132 aa8.81□□□□□ -1
CUX1-221ENST00000622516 MZT1Q08AG7 82 aa8.81□□□□□ -1
CUX1-221ENST00000622516 CATR1Q13166 79 aa8.81□□□□□ -1
CUX1-221ENST00000622516 PEA15Q15121 130 aa8.81□□□□□ -1
CUX1-221ENST00000622516 H2BFWTQ7Z2G1 175 aa8.81□□□□□ -1
CUX1-221ENST00000622516 ISOC2Q96AB3 205 aa8.81□□□□□ -1
CUX1-221ENST00000622516 SNX22Q96L94 193 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms