RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 QTRT1Q9BXR0 403 aaKnown RBP9.74□□□□□ -0.85
CLIP1-219ENST00000620786 APCSP02743 223 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 DHRS11Q6UWP2 260 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 TCTEX1D1Q8N7M0 179 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 RNASE6Q93091 150 aaKnown RBP9.73□□□□□ -0.85
CLIP1-219ENST00000620786 C7orf69Q9H7B7 122 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 ZNF708P17019 499 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 DLX1P56177 255 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 C10orf128Q5T292 105 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 DNM1P46Q6ZS02 220 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 LSM10Q969L4 123 aaKnown RBP9.73□□□□□ -0.85
CLIP1-219ENST00000620786 WFDC6Q9BQY6 131 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 LOC389332A0A1B0GUA5 103 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 PGA5P0DJD9 388 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 FAM53AQ6NSI3 398 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-219ENST00000620786 VSIG10L2P0DP72 767 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 MUC1P15941 1255 aaPredicted RBP9.73□□□□□ -0.85
CLIP1-219ENST00000620786 SNRPD3P62318 126 aaKnown RBP9.73□□□□□ -0.85
CLIP1-219ENST00000620786 SELENOTP62341 195 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 BPIFA4PQ86YQ2 179 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 CLRN3Q8NCR9 226 aa9.73□□□□□ -0.85
CLIP1-219ENST00000620786 ZNF253O75346 499 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 IGF2P01344 180 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 DLK1P80370 383 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 HIST3H3Q16695 136 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 DPPA3Q6W0C5 159 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 ZNRF1Q8ND25 227 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 OR4X2Q8NGF9 303 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 TMEM222Q9H0R3 208 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 S1PR2O95136 353 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 MEOX2P50222 304 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 FAM74A3Q4VXF1 159 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 VAX1Q5SQQ9 334 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 OR8A1Q8NGG7 326 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 AURKAIP1Q9NWT8 199 aaPredicted RBP9.72□□□□□ -0.85
CLIP1-219ENST00000620786 J3QW42 95 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 IGHV3-23P01764 117 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 RCC1P18754 421 aaPredicted RBP9.72□□□□□ -0.85
CLIP1-219ENST00000620786 NPPCP23582 126 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 C1orf162Q8NEQ5 155 aaPredicted RBP9.72□□□□□ -0.85
CLIP1-219ENST00000620786 OR5AU1Q8NGC0 362 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 IGHV2OR16-5A0A0B4J2B6 119 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 NPIPB6E9PJ23 425 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 ATP6V0CP27449 155 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 NPBWR2P48146 333 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 COMPP49747 757 aaPredicted RBP9.72□□□□□ -0.85
CLIP1-219ENST00000620786 COX19Q49B96 90 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 LRP11Q86VZ4 500 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 C9orf106Q8NAJ2 232 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 UMODP07911 640 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 IGHV1-2P23083 117 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 TSPOP30536 169 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 VKORC1L1Q8N0U8 176 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 MRPL30Q8TCC3 161 aaKnown RBP9.72□□□□□ -0.85
CLIP1-219ENST00000620786 WDYHV1Q96HA8 205 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 G6PC2Q9NQR9 355 aa9.72□□□□□ -0.85
CLIP1-219ENST00000620786 SSTR5P35346 364 aa9.71□□□□□ -0.85
CLIP1-219ENST00000620786 TMEM183BQ1AE95 376 aa9.71□□□□□ -0.85
CLIP1-219ENST00000620786 IER3P46695 156 aa9.71□□□□□ -0.85
CLIP1-219ENST00000620786 FGFRL1Q8N441 504 aa9.71□□□□□ -0.85
CLIP1-219ENST00000620786 OR10D4PQ8NGN7 298 aa9.71□□□□□ -0.85
CLIP1-219ENST00000620786 C5orf52A6NGY3 159 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 IGKV3-20P01619 116 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 GPX1P07203 203 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 CRYBA2P53672 197 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 HSPB7Q9UBY9 170 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 SIAH2O43255 324 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 CXCL3P19876 107 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 ELOBQ15370 118 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 ST6GAL2Q96JF0 529 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 SLC25A33Q9BSK2 321 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 TRAV34A0A0B4J273 112 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 HSPE1P61604 102 aaKnown RBP9.71□□□□□ -0.86
CLIP1-219ENST00000620786 CX3CL1P78423 397 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 RELBQ01201 579 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 AWAT1Q58HT5 328 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 LYRM7Q5U5X0 104 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 ZNF880Q6PDB4 577 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 ACP7Q6ZNF0 438 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 SELENOHQ8IZQ5 122 aaKnown RBP9.71□□□□□ -0.86
CLIP1-219ENST00000620786 TMEM191AQ9H0A3 160 aa9.71□□□□□ -0.86
CLIP1-219ENST00000620786 CNTRLQ7Z7A1 2325 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 MMP9P14780 707 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 CEBPEQ15744 281 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 UBE2V2Q15819 145 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 FAM201AQ5SY85 155 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 PEAR1Q5VY43 1037 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-219ENST00000620786 GTF2H5Q6ZYL4 71 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 OR11H7Q8NGC8 314 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 PGPA6NDG6 321 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 MARCH11A6NNE9 402 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 RAMP1O60894 148 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 IGKV1D-33P01593 117 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 IGKV1-33P01594 117 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 CD59P13987 128 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 UNC119Q13432 240 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 TBR1Q16650 682 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 WDR25Q64LD2 544 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-219ENST00000620786 GPR146Q96CH1 333 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 PACRGQ96M98 296 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms