RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CHCHD2Q9Y6H1 151 aaPredicted RBP8.95□□□□□ -0.98
LIG1-220ENST00000601091 IGKV1-9A0A0C4DH69 117 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 TLE1Q04724 770 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 TMEM183BQ1AE95 376 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 CLDN23Q96B33 292 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 HS3ST3B1Q9Y662 390 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 ZDBF2Q9HCK1 2354 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 NKX2-6A6NCS4 301 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 SIRPB1O00241 398 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 TRGC1P0CF51 173 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 ESDP10768 282 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 ZNF92Q03936 586 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 C17orf78Q8N4C9 275 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 OR5D13Q8NGL4 314 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 SAP25Q8TEE9 199 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 TMEM204Q9BSN7 226 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 TM2D1Q9BX74 207 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 SLC7A10Q9NS82 523 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 PSG8Q9UQ74 426 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 KLF13Q9Y2Y9 288 aaPredicted RBP8.94□□□□□ -0.98
LIG1-220ENST00000601091 WSB1Q9Y6I7 421 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 H0YIZ8 118 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 SH2D1BO14796 132 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 TYMSP04818 313 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 OR10J1P30954 320 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 RBM11P57052 281 aaKnown RBP8.94□□□□□ -0.98
LIG1-220ENST00000601091 EWSR1Q01844 656 aaKnown RBP eCLIP8.94□□□□□ -0.98
LIG1-220ENST00000601091 RSPO4Q2I0M5 234 aaPredicted RBP8.94□□□□□ -0.98
LIG1-220ENST00000601091 OR4A4PQ8NGN8 299 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 TUBA4BQ9H853 241 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 PSENENQ9NZ42 101 aa8.94□□□□□ -0.98
LIG1-220ENST00000601091 IGLV3-32A0A0A0MS00 114 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 A0A1W2PRS3 328 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 ODAMA1E959 279 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 F8VVB4 439 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 F8VWA3 439 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 IAPPP10997 89 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 GATA4P43694 442 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 ERVK-16P61578 105 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 GAGE5Q13069 117 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 GAGE6Q13070 117 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 TMEM54Q969K7 222 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 LIN7CQ9NUP9 197 aaKnown RBP8.93□□□□□ -0.98
LIG1-220ENST00000601091 HSPB8Q9UJY1 196 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 SSUH2Q9Y2M2 353 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 LTBP2Q14767 1821 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 IGHV3-64DA0A0J9YX35 117 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 SPAARA0A1B0GVQ0 90 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 RBFOX3A6NFN3 312 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 SRSF10O75494 262 aaKnown RBP8.93□□□□□ -0.98
LIG1-220ENST00000601091 CCL1P22362 96 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 SSTR5P35346 364 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 SPINK14Q6IE38 97 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 ASCL5Q7RTU5 278 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 ZNF429Q86V71 674 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 GAPTQ8N292 157 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 RNF166Q96A37 237 aaPredicted RBP8.93□□□□□ -0.98
LIG1-220ENST00000601091 TMEM230Q96A57 120 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 TVP23CQ96ET8 276 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 RAB40CQ96S21 281 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 ACTR3CQ9C0K3 210 aaPredicted RBP8.93□□□□□ -0.98
LIG1-220ENST00000601091 MYO7BQ6PIF6 2116 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 A0A0A6YYD4 124 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 SRSF4Q08170 494 aaKnown RBP8.93□□□□□ -0.98
LIG1-220ENST00000601091 TESK1Q15569 626 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 ZNF787Q6DD87 383 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 WDR82Q6UXN9 313 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 DEFB127Q9H1M4 99 aa8.93□□□□□ -0.98
LIG1-220ENST00000601091 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.92□□□□□ -0.98
LIG1-220ENST00000601091 RPL36A-HNRNPH2H7BZ11 118 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 M0R2Z0 102 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 FGF16O43320 207 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 CHST1O43916 411 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 WISP1O95388 367 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 PSMB3P49720 205 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 ZNF83P51522 516 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 MPV17LQ2QL34 196 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 CST9LP1Q5W188 147 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 FADS6Q8N9I5 356 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 TMEM178AQ8NBL3 297 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 LHX4Q969G2 390 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 ANAPC13Q9BS18 74 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 NPY1RP25929 384 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 QRFPP83859 136 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 OR1C1Q15619 314 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 RNF144BQ7Z419 303 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 MOB3AQ96BX8 217 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 MALSU1Q96EH3 234 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 ZNF727A8MUV8 499 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 J3QR89 54 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 BCL3P20749 454 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 TAS2R30P59541 319 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 SSBP2P81877 361 aaPredicted RBP8.92□□□□□ -0.98
LIG1-220ENST00000601091 ADIRFQ15847 76 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 SPATA46Q5T0L3 261 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 CCL28Q9NRJ3 127 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 PLA2G3Q9NZ20 509 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 LIPGQ9Y5X9 500 aa8.92□□□□□ -0.98
LIG1-220ENST00000601091 PRRC2CQ9Y520 2896 aaKnown RBP8.92□□□□□ -0.98
LIG1-220ENST00000601091 OR5B21A6NL26 309 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms