RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ZNF134P52741 427 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 UBE2MP61081 183 aaKnown RBP10.25□□□□□ -0.77
UPF1-208ENST00000600012 ARF6P62330 175 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 CT45A1Q5HYN5 189 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 LPCAT3Q6P1A2 487 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 ZNF645Q8N7E2 425 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 CT45A3Q8NHU0 189 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 LINC01006Q8NI28 216 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 LHX4Q969G2 390 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 C5orf30Q96GV9 206 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 ABHD14AQ9BUJ0 271 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 ALX4Q9H161 411 aaPredicted RBP10.25□□□□□ -0.77
UPF1-208ENST00000600012 IFI27L2Q9H2X8 130 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 GHITMQ9H3K2 345 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 PRR13Q9NZ81 148 aa10.25□□□□□ -0.77
UPF1-208ENST00000600012 CMYA5Q8N3K9 4069 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 CRYM-AS1A6NIL9 109 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 IGHV4-59P01825 116 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 HLA-AP01891 365 aaKnown RBP10.24□□□□□ -0.77
UPF1-208ENST00000600012 IER3P46695 156 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 GPR12P47775 334 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 PROK1P58294 105 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 KRTAP10-3P60369 221 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 SUPT4H1P63272 117 aaKnown RBP10.24□□□□□ -0.77
UPF1-208ENST00000600012 DHODHQ02127 395 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 DHRS2Q13268 280 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 Q3ZCU0 254 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 ZNF626Q68DY1 528 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 LYG2Q86SG7 212 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 TBC1D26Q86UD7 250 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 DRAM1Q8N682 238 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 Q8N7P7 452 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 CCDC71LQ8N9Z2 235 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 CASTOR1Q8WTX7 329 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 RTN4IP1Q8WWV3 396 aaPredicted RBP10.24□□□□□ -0.77
UPF1-208ENST00000600012 ZNF486Q96H40 463 aaPredicted RBP10.24□□□□□ -0.77
UPF1-208ENST00000600012 TMEM133Q9H2Q1 129 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 OR51J1Q9H342 316 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 NAA60Q9H7X0 242 aa10.24□□□□□ -0.77
UPF1-208ENST00000600012 GPN1Q9HCN4 374 aaPredicted RBP10.24□□□□□ -0.77
UPF1-208ENST00000600012 TEX13DA0A0J9YY54 714 aaPredicted RBP10.23□□□□□ -0.77
UPF1-208ENST00000600012 A0A0U1RQK1 487 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 C9orf170A2RU37 121 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 M0R1W7 72 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 ITGB1BP1O14713 200 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 CREBL2O60519 120 aaPredicted RBP10.23□□□□□ -0.77
UPF1-208ENST00000600012 SFT2D2O95562 160 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 RBP4P02753 201 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 COX7A1P24310 79 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 RND3P61587 244 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 TMEM128Q5BJH2 165 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 LY6G6FQ5SQ64 297 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 SLC25A48Q6ZT89 311 aaKnown RBP10.23□□□□□ -0.77
UPF1-208ENST00000600012 LYG1Q8N1E2 194 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 BVESQ8NE79 360 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 ZNF431Q8TF32 576 aaPredicted RBP10.23□□□□□ -0.77
UPF1-208ENST00000600012 AGMATQ9BSE5 352 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 SIRT7Q9NRC8 400 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 SDHAF2Q9NX18 166 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 KPTNQ9Y664 436 aa10.23□□□□□ -0.77
UPF1-208ENST00000600012 PRKDCP78527 4128 aaKnown RBP10.22□□□□□ -0.77
UPF1-208ENST00000600012 A0A087X0M5 115 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 IGHV2-26A0A0B4J1V2 119 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 A0A1B0GX30 115 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 SNRPGP15A8MWD9 76 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 SSNA1O43805 119 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 PGLYRP1O75594 196 aaPredicted RBP10.22□□□□□ -0.77
UPF1-208ENST00000600012 RAB7AP51149 207 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 KLRD1Q13241 179 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 SP6Q3SY56 376 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 RPL39P5Q59GN2 51 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 LIN54Q6MZP7 749 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 SGPP2Q8IWX5 399 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 CMTM1Q8IZ96 169 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 UXS1Q8NBZ7 420 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 OR51H1Q8NH63 302 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 OR9G1Q8NH87 305 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 AKR1E2Q96JD6 320 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 DMRTB1Q96MA1 342 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 FAM96BQ9Y3D0 163 aa10.22□□□□□ -0.77
UPF1-208ENST00000600012 TET2Q6N021 2002 aaPredicted RBP10.21□□□□□ -0.77
UPF1-208ENST00000600012 SAA2-SAA4A0A096LPE2 208 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 hCG_1809904A0A1W2PP81 198 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 A0A1W2PPE2 198 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 A0A1W2PR64 198 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 A0A1W2PRV1 198 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 BTBD17A6NE02 478 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 J3QR06 171 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 M0R1X1 148 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 MPPED1O15442 326 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 FBP1P09467 338 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 OR5AC1P0C628 307 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 SAA2P0DJI9 122 aaPredicted RBP10.21□□□□□ -0.77
UPF1-208ENST00000600012 CD34P28906 385 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 RRAS2P62070 204 aaPredicted RBP10.21□□□□□ -0.77
UPF1-208ENST00000600012 RPL30P62888 115 aaKnown RBP10.21□□□□□ -0.77
UPF1-208ENST00000600012 FCN2Q15485 313 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 ANKRD55Q3KP44 614 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 DHRS7BQ6IAN0 325 aaPredicted RBP10.21□□□□□ -0.77
UPF1-208ENST00000600012 Q6ZSV7 163 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms