RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 CNIH1O95406 144 aa11.11□□□□□ -0.63
LIG1-218ENST00000599322 CBX5P45973 191 aa11.11□□□□□ -0.63
LIG1-218ENST00000599322 RAB25P57735 213 aa11.11□□□□□ -0.63
LIG1-218ENST00000599322 ZNF260Q3ZCT1 412 aa11.11□□□□□ -0.63
LIG1-218ENST00000599322 NUDCD2Q8WVJ2 157 aa11.11□□□□□ -0.63
LIG1-218ENST00000599322 RITA1Q96K30 269 aa11.11□□□□□ -0.63
LIG1-218ENST00000599322 CLCC1Q96S66 551 aa11.11□□□□□ -0.63
LIG1-218ENST00000599322 RNF167Q9H6Y7 350 aa11.11□□□□□ -0.63
LIG1-218ENST00000599322 NECAP2Q9NVZ3 263 aa11.11□□□□□ -0.63
LIG1-218ENST00000599322 SDHAF2Q9NX18 166 aa11.11□□□□□ -0.63
LIG1-218ENST00000599322 PRELID3BQ9Y3B1 194 aa11.11□□□□□ -0.63
LIG1-218ENST00000599322 IGHV7-81A0A0B4J1V7 117 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 SMIM31A0A1B0GVY4 71 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 CCL24O00175 119 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 SHOXO15266 292 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 ATP6V0E1O15342 81 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 RPLP1P05386 114 aaKnown RBP11.1□□□□□ -0.63
LIG1-218ENST00000599322 IGLL1P15814 213 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 LSM3P62310 102 aaKnown RBP11.1□□□□□ -0.63
LIG1-218ENST00000599322 CX3CL1P78423 397 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 PSG5Q15238 335 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 ECSCRQ19T08 205 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 BEAN1Q3B7T3 259 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 PYHIN1Q6K0P9 492 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 H1FOOQ8IZA3 346 aaPredicted RBP11.1□□□□□ -0.63
LIG1-218ENST00000599322 ZNF383Q8NA42 475 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 DCUN1D5Q9BTE7 237 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 ANXA10Q9UJ72 324 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 MRPS7Q9Y2R9 242 aaKnown RBP11.1□□□□□ -0.63
LIG1-218ENST00000599322 OR2W1Q9Y3N9 320 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 A3GALT2U3KPV4 340 aa11.1□□□□□ -0.63
LIG1-218ENST00000599322 J3QRK9 145 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 CREBL2O60519 120 aaPredicted RBP11.09□□□□□ -0.63
LIG1-218ENST00000599322 VMA21Q3ZAQ7 101 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 KPRPQ5T749 579 aaPredicted RBP11.09□□□□□ -0.63
LIG1-218ENST00000599322 ZNF562Q6V9R5 426 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 LCNL1Q6ZST4 164 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 PPP1R27Q86WC6 154 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 MRPL41Q8IXM3 137 aaKnown RBP11.09□□□□□ -0.63
LIG1-218ENST00000599322 RNF152Q8N8N0 203 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 BEST4Q8NFU0 473 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 OR5H6Q8NGV6 325 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 KCTD12Q96CX2 325 aaKnown RBP11.09□□□□□ -0.63
LIG1-218ENST00000599322 YIPF6Q96EC8 236 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 HARBI1Q96MB7 349 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 IFT46Q9NQC8 304 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 FOXA2Q9Y261 457 aaPredicted RBP11.09□□□□□ -0.63
LIG1-218ENST00000599322 VSIG4Q9Y279 399 aa11.09□□□□□ -0.63
LIG1-218ENST00000599322 A0A1W2PN81 502 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 SLC25A17O43808 307 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 ACTL6BO94805 426 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 NFYAP23511 347 aaPredicted RBP11.08□□□□□ -0.64
LIG1-218ENST00000599322 CHRNA7P36544 502 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 ACTBL2Q562R1 376 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 UBE2NLQ5JXB2 153 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 UNQ5815/PRO19632Q6UWF5 114 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 ZNF645Q8N7E2 425 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 LINC00482Q8N8I6 264 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 BVESQ8NE79 360 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 OR5M8Q8NGP6 311 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 C4orf3Q8WVX3 66 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 UBE2E2Q96LR5 201 aa11.08□□□□□ -0.64
LIG1-218ENST00000599322 ELF5Q9UKW6 265 aaPredicted RBP11.08□□□□□ -0.64
LIG1-218ENST00000599322 G3V318 75 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 XRCC3O43542 346 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 PROP1O75360 226 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 TUSC2O75896 110 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 CA2P00918 260 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 IGKV1-16P04430 117 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 PSMB8P28062 276 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 RPS19P39019 145 aaKnown RBP11.07□□□□□ -0.64
LIG1-218ENST00000599322 RAB9AP51151 201 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 GNB1P62873 340 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 CFHR3Q02985 330 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 FXYD3Q14802 87 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 AKIRIN2Q53H80 203 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 TMEM69Q5SWH9 247 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 SAMD12Q8N8I0 201 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 OSR1Q8TAX0 266 aaPredicted RBP11.07□□□□□ -0.64
LIG1-218ENST00000599322 ARPC1AQ92747 370 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 BORCS5Q969J3 196 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 RBMXL1Q96E39 390 aaKnown RBP11.07□□□□□ -0.64
LIG1-218ENST00000599322 TMEM68Q96MH6 324 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 AUNIPQ9H7T9 357 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 ZNF355PQ9NSJ1 428 aa11.07□□□□□ -0.64
LIG1-218ENST00000599322 IGKV1D-8A0A087WSZ0 117 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 HLA-DQB1P01920 261 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 PPIFP30405 207 aaKnown RBP11.06□□□□□ -0.64
LIG1-218ENST00000599322 DUTP33316 252 aaKnown RBP11.06□□□□□ -0.64
LIG1-218ENST00000599322 TMEM177Q53S58 311 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 FOXB2Q5VYV0 432 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 MZT2AQ6P582 158 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 KCTD9Q7L273 389 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 HOGA1Q86XE5 327 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 GRPEL2Q8TAA5 225 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 MRAPQ8TCY5 172 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 ACOT12Q8WYK0 555 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 SLC25A38Q96DW6 304 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 P2RX4Q99571 388 aa11.06□□□□□ -0.64
LIG1-218ENST00000599322 PHB2Q99623 299 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms