RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 RPL39P5Q59GN2 51 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 NCR3LG1Q68D85 454 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 PLET1Q6UQ28 207 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 SLC25A42Q86VD7 318 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 LYG1Q8N1E2 194 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 ZNF645Q8N7E2 425 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 OR10X1Q8NGY0 326 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 C17orf50Q8WW18 174 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 AKR1E2Q96JD6 320 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 SCGB3A2Q96PL1 93 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 C20orf85Q9H1P6 137 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 BEX1Q9HBH7 125 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 NUDT15Q9NV35 164 aa7.62□□□□□ -1.19
TRIM28-208ENST00000597172 DNAH1Q9P2D7 4330 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 IGHV3OR16-10A0A075B7F0 116 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 INMT-MINDY4F8WBC2 141 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 RAB29O14966 203 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 MPPED1O15442 326 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 TNFSF12O43508 249 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 SLC22A5O76082 557 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 RLN1P04808 185 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 CT45A6P0DMU7 189 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 CT45A5P0DMU8 189 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 CT45A7P0DMV0 189 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 IGHV4-38-2P0DP08 117 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 GPR12P47775 334 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 ZNF137PP52743 207 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 PIGPP57054 158 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 BRWD1-AS2P59051 145 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 RND3P61587 244 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 RPL30P62888 115 aaKnown RBP7.61□□□□□ -1.19
TRIM28-208ENST00000597172 UBA52P62987 128 aaKnown RBP7.61□□□□□ -1.19
TRIM28-208ENST00000597172 SUPT4H1P63272 117 aaKnown RBP7.61□□□□□ -1.19
TRIM28-208ENST00000597172 TRIM16LQ309B1 348 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 ZNF833PQ6ZTB9 187 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 TMED4Q7Z7H5 227 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 LHFPL4Q7Z7J7 247 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 DYNAPQ8N1N2 210 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 PIP4P2Q8N4L2 257 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 MINDY2Q8NBR6 621 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 ZBTB34Q8NCN2 500 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 CAPSLQ8WWF8 208 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 ZNF486Q96H40 463 aaPredicted RBP7.61□□□□□ -1.19
TRIM28-208ENST00000597172 ALX4Q9H161 411 aaPredicted RBP7.61□□□□□ -1.19
TRIM28-208ENST00000597172 GHITMQ9H3K2 345 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 ESM1Q9NQ30 184 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 SLC2A9Q9NRM0 540 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 PIPOXQ9P0Z9 390 aa7.61□□□□□ -1.19
TRIM28-208ENST00000597172 SOX21Q9Y651 276 aaPredicted RBP7.61□□□□□ -1.19
TRIM28-208ENST00000597172 A0A0B4J293 547 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 IGHV1-69DA0A0B4J2H0 117 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 LINC00473A8K010 186 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 PEX14O75381 377 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 FSHBP01225 129 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 IGHV1-69P01742 117 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 OR4E1P0C645 316 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 AKR1C4P17516 323 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 EPHA1P21709 976 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 PAX6P26367 422 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 HTR1DP28221 377 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 DUTP33316 252 aaKnown RBP7.6□□□□□ -1.19
TRIM28-208ENST00000597172 RAG2P55895 527 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 RUSC1-AS1Q66K80 236 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 Q6ZNX1 250 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 TBC1D26Q86UD7 250 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 DRAXINQ8NBI3 349 aaPredicted RBP7.6□□□□□ -1.19
TRIM28-208ENST00000597172 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.6□□□□□ -1.19
TRIM28-208ENST00000597172 RTN4IP1Q8WWV3 396 aaPredicted RBP7.6□□□□□ -1.19
TRIM28-208ENST00000597172 RBMXL1Q96E39 390 aaKnown RBP7.6□□□□□ -1.19
TRIM28-208ENST00000597172 DPM3Q9P2X0 92 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 C14orf166Q9Y224 244 aaKnown RBP7.6□□□□□ -1.19
TRIM28-208ENST00000597172 COL7A1Q02388 2944 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 STAB2Q8WWQ8 2551 aa7.6□□□□□ -1.19
TRIM28-208ENST00000597172 TRAV40A0A0B4J280 105 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 CRYM-AS1A6NIL9 109 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 LEUTXA8MZ59 168 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 M0R1X1 148 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 NPFFO15130 113 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 IL5P05113 134 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 REG1BP48304 166 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 PPP1R1AQ13522 171 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 ABCA11PQ4W5N1 156 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 TMEM128Q5BJH2 165 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 TPTE2P1Q5T6R2 138 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 MINOS1Q5TGZ0 78 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 FAM71F2Q6NXP2 309 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 BRD3OSQ6XYD6 125 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 GLDNQ6ZMI3 551 aaPredicted RBP7.59□□□□□ -1.19
TRIM28-208ENST00000597172 ZNF66Q6ZN08 573 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 CMTM1Q8IZ96 169 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 ZNF383Q8NA42 475 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 OR52B4Q8NGK2 314 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 DDB2Q92466 427 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 S1PR3Q99500 378 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 NABP2Q9BQ15 211 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 SEC22CQ9BRL7 303 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 MRPL20Q9BYC9 149 aaKnown RBP7.59□□□□□ -1.19
TRIM28-208ENST00000597172 NAA60Q9H7X0 242 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 TBL2Q9Y4P3 447 aaKnown RBP7.59□□□□□ -1.19
TRIM28-208ENST00000597172 MINOS1-NBL1R4GNA1 71 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms