RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SPSB4Q96A44 273 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 TMEM9BQ9NQ34 198 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 PRDM6Q9NQX0 595 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 VAX2Q9UIW0 290 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 A0A1B0GW64 132 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 RPP25LQ8N5L8 163 aaKnown RBP12.91□□□□□ -0.34
UPF1-204ENST00000596842 DRAM1Q8N682 238 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 OR1L1Q8NH94 360 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 OR5P3Q8WZ94 311 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 CIB3Q96Q77 187 aaPredicted RBP12.91□□□□□ -0.34
UPF1-204ENST00000596842 A0A087WWC5 75 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 IGKV1D-33P01593 117 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 IGKV1-33P01594 117 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 FAM3BP58499 235 aaPredicted RBP12.91□□□□□ -0.34
UPF1-204ENST00000596842 AESQ08117 197 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 OR52L2PQ8NGH6 319 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 TAF15Q92804 592 aaKnown RBP eCLIP12.91□□□□□ -0.34
UPF1-204ENST00000596842 SDF2L1Q9HCN8 221 aa12.91□□□□□ -0.34
UPF1-204ENST00000596842 WNT9BO14905 357 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 PAGE4O60829 102 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 CHRNB4P30926 498 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 GALR1P47211 349 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 PSMB3P49720 205 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 GFRA1P56159 465 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 TMEM241Q24JQ0 296 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 BSXQ3C1V8 233 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 FFAR4Q5NUL3 377 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 MDP1Q86V88 176 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 OR10A7Q8NGE5 316 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 OR13D1Q8NGV5 346 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 CEACAM1P13688 526 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 HINT1P49773 126 aaPredicted RBP12.9□□□□□ -0.34
UPF1-204ENST00000596842 RAB7AP51149 207 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 DUSP3P51452 185 aaPredicted RBP12.9□□□□□ -0.34
UPF1-204ENST00000596842 EDDM3AQ14507 147 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 P2RY6Q15077 328 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 OR4X1Q8NH49 305 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 NINJ1Q92982 152 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 VAMP8Q9BV40 100 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 PARD6GQ9BYG4 376 aaPredicted RBP12.9□□□□□ -0.34
UPF1-204ENST00000596842 POLEQ07864 2286 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 GZMBP10144 247 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 COL10A1Q03692 680 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 Q6ZVH6 145 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 OR10G4Q8NGN3 311 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 OR10G9Q8NGN4 311 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 OR10G7Q8NGN6 311 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 MRGPRDQ8TDS7 321 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 POM121L2Q96KW2 1035 aa12.9□□□□□ -0.34
UPF1-204ENST00000596842 WDR61Q9GZS3 305 aaKnown RBP12.9□□□□□ -0.34
UPF1-204ENST00000596842 LIN7CQ9NUP9 197 aaKnown RBP12.9□□□□□ -0.34
UPF1-204ENST00000596842 CISD1Q9NZ45 108 aaKnown RBP12.9□□□□□ -0.34
UPF1-204ENST00000596842 ZG16O60844 167 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 LYZL6O75951 148 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 RAC2P15153 192 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 TFF3Q07654 80 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 PRSS8Q16651 343 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 ABHD14BQ96IU4 210 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 ARG2P78540 354 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 MEF2BQ02080 365 aaPredicted RBP12.89□□□□□ -0.35
UPF1-204ENST00000596842 ZNF585BQ52M93 769 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 C1orf185Q5T7R7 199 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 TMEM108Q6UXF1 575 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 MRGPRGQ86SM5 289 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 BAGE3Q86Y29 109 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 BAGE2Q86Y30 109 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 OR51G1Q8NGK1 321 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 KCNIP1Q9NZI2 227 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 PGPEP1LA6NFU8 196 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 LHX2P50458 406 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 TGFBR3Q03167 851 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 ACSM6Q6P461 480 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 COLCA1Q6ZS62 124 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 TTTY12Q9BZ98 90 aa12.89□□□□□ -0.35
UPF1-204ENST00000596842 DUXBA0A1W2PPF3 345 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 LAMTOR5O43504 91 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 EDDM3BP56851 147 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 TMEM251Q8N6I4 163 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 SCCPDHQ8NBX0 429 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 PARLQ9H300 379 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 KIAA1549Q9HCM3 1950 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 TSPAN7P41732 249 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 LRRC75BQ2VPJ9 315 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 GCSAMLQ5JQS6 135 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 RNASE8Q8TDE3 154 aaKnown RBP12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A10PA6NDY2 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A18PA6NE21 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A16PA6NEW6 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A20PA6NIJ5 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A8PA6NJQ4 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A7PA6NKC0 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A22PA8MWA6 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A12PA8MX19 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A5PA8MXJ8 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A23PA8MXZ1 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 C1QTNF9BB2RNN3 333 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 S1PR2O95136 353 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 OPN1MWP04001 364 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A15PP0C7V4 464 aa12.88□□□□□ -0.35
UPF1-204ENST00000596842 FAM90A13PP0C7W8 464 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms