RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 CRIP2P52943 208 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-206ENST00000595974 LINC00205P59089 165 aa12.7□□□□□ -0.38
TRIM28-206ENST00000595974 RPS16P62249 146 aaKnown RBP12.7□□□□□ -0.38
TRIM28-206ENST00000595974 CBX3Q13185 183 aa12.7□□□□□ -0.38
TRIM28-206ENST00000595974 PSG5Q15238 335 aa12.7□□□□□ -0.38
TRIM28-206ENST00000595974 PDLIM3Q53GG5 364 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-206ENST00000595974 ZNF660Q6AZW8 331 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-206ENST00000595974 ETV3LQ6ZN32 361 aa12.7□□□□□ -0.38
TRIM28-206ENST00000595974 ZNF695Q8IW36 515 aa12.7□□□□□ -0.38
TRIM28-206ENST00000595974 FLYWCH2Q96CP2 140 aaKnown RBP12.7□□□□□ -0.38
TRIM28-206ENST00000595974 C5orf30Q96GV9 206 aa12.7□□□□□ -0.38
TRIM28-206ENST00000595974 ADTRPQ96IZ2 230 aa12.7□□□□□ -0.38
TRIM28-206ENST00000595974 AUNIPQ9H7T9 357 aa12.7□□□□□ -0.38
TRIM28-206ENST00000595974 METTL1Q9UBP6 276 aaKnown RBP12.7□□□□□ -0.38
TRIM28-206ENST00000595974 OR2W1Q9Y3N9 320 aa12.7□□□□□ -0.38
TRIM28-206ENST00000595974 TNCP24821 2201 aa12.7□□□□□ -0.38
TRIM28-206ENST00000595974 PRKDCP78527 4128 aaKnown RBP12.69□□□□□ -0.38
TRIM28-206ENST00000595974 TRAV41A0A0B4J266 112 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 SLC22A5O76082 557 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 RRASP10301 218 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 PSMB8P28062 276 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 PPIFP30405 207 aaKnown RBP12.69□□□□□ -0.38
TRIM28-206ENST00000595974 CBX5P45973 191 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 LUMP51884 338 aaPredicted RBP12.69□□□□□ -0.38
TRIM28-206ENST00000595974 NCS1P62166 190 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 CX3CL1P78423 397 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 NDPQ00604 133 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 RTL8BQ17RB0 113 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 C8orf86Q6ZUL3 223 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 ZNF645Q8N7E2 425 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 TCTEX1D1Q8N7M0 179 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 LINC00482Q8N8I6 264 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 BEST4Q8NFU0 473 aa12.69□□□□□ -0.38
TRIM28-206ENST00000595974 S100A16Q96FQ6 103 aaKnown RBP12.69□□□□□ -0.38
TRIM28-206ENST00000595974 G3V318 75 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 XRCC3O43542 346 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 DUS4LO95620 317 aaKnown RBP12.68□□□□□ -0.38
TRIM28-206ENST00000595974 HLA-DQB1P01920 261 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 NFYAP23511 347 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-206ENST00000595974 DUTP33316 252 aaKnown RBP12.68□□□□□ -0.38
TRIM28-206ENST00000595974 MYCNOSP40205 109 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 CDX1P47902 265 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-206ENST00000595974 LGALS7P47929 136 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 ARPC4P59998 168 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 VBP1P61758 197 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 OXLD1Q5BKU9 147 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 LCNL1Q6ZST4 164 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 C18orf65Q6ZTR6 163 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 HOGA1Q86XE5 327 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 SAMD12Q8N8I0 201 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 MYOZ3Q8TDC0 251 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 RCC1LQ96I51 464 aaKnown RBP12.68□□□□□ -0.38
TRIM28-206ENST00000595974 HARBI1Q96MB7 349 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 WSB1Q9Y6I7 421 aa12.68□□□□□ -0.38
TRIM28-206ENST00000595974 SLC25A17O43808 307 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 TUSC2O75896 110 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 GABARAPO95166 117 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 CA2P00918 260 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 ECSCRQ19T08 205 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 TMEM177Q53S58 311 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 C19orf54Q5BKX5 351 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 TMEM65Q6PI78 240 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 ZNF562Q6V9R5 426 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 MRPL41Q8IXM3 137 aaKnown RBP12.67□□□□□ -0.38
TRIM28-206ENST00000595974 GVQW1Q8N7I0 195 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 MINDY2Q8NBR6 621 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 BVESQ8NE79 360 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 ABHD5Q8WTS1 349 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 DDB2Q92466 427 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 P2RX4Q99571 388 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 MRPS26Q9BYN8 205 aaKnown RBP12.67□□□□□ -0.38
TRIM28-206ENST00000595974 FBXO7Q9Y3I1 522 aa12.67□□□□□ -0.38
TRIM28-206ENST00000595974 FCN1O00602 326 aa12.66□□□□□ -0.38
TRIM28-206ENST00000595974 IGLV1-40P01703 118 aa12.66□□□□□ -0.38
TRIM28-206ENST00000595974 IGLV2-23P01705 113 aa12.66□□□□□ -0.38
TRIM28-206ENST00000595974 IGLL1P15814 213 aa12.66□□□□□ -0.38
TRIM28-206ENST00000595974 TMEM267Q0VDI3 215 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-206ENST00000595974 TMEM69Q5SWH9 247 aa12.66□□□□□ -0.38
TRIM28-206ENST00000595974 PPP1R27Q86WC6 154 aa12.66□□□□□ -0.38
TRIM28-206ENST00000595974 ANKRD13BQ86YJ7 626 aa12.66□□□□□ -0.38
TRIM28-206ENST00000595974 C4orf3Q8WVX3 66 aa12.66□□□□□ -0.38
TRIM28-206ENST00000595974 TPSG1Q9NRR2 321 aa12.66□□□□□ -0.38
TRIM28-206ENST00000595974 NECAP2Q9NVZ3 263 aa12.66□□□□□ -0.38
TRIM28-206ENST00000595974 FOXA2Q9Y261 457 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-206ENST00000595974 DNAH3Q8TD57 4116 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 IGKV1D-13A0A0B4J2D9 117 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 LINC00473A8K010 186 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 J3QRK9 145 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 SHOXO15266 292 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 IGKV1-13P0DP09 117 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 PTHLHP12272 177 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 TAS2R20P59543 309 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 KCTD9Q7L273 389 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 REC114Q7Z4M0 266 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 ACOT12Q8WYK0 555 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 ARPC1AQ92747 370 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 RAX2Q96IS3 184 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 CMTM3Q96MX0 182 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 CLCC1Q96S66 551 aa12.65□□□□□ -0.38
TRIM28-206ENST00000595974 GPR61Q9BZJ8 451 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms