RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 RCC1LQ96I51 464 aaKnown RBP11.82□□□□□ -0.52
TRIM28-205ENST00000595028 GAB2Q9UQC2 676 aa11.82□□□□□ -0.52
TRIM28-205ENST00000595028 EPPK1P58107 5090 aaKnown RBP11.82□□□□□ -0.52
TRIM28-205ENST00000595028 BIRC6Q9NR09 4857 aa11.81□□□□□ -0.52
TRIM28-205ENST00000595028 A0A0A6YYH2 397 aa11.81□□□□□ -0.52
TRIM28-205ENST00000595028 TRAV41A0A0B4J266 112 aa11.81□□□□□ -0.52
TRIM28-205ENST00000595028 A6NJ64 397 aa11.81□□□□□ -0.52
TRIM28-205ENST00000595028 G3V318 75 aa11.81□□□□□ -0.52
TRIM28-205ENST00000595028 PPIFP30405 207 aaKnown RBP11.81□□□□□ -0.52
TRIM28-205ENST00000595028 MYOZ3Q8TDC0 251 aa11.81□□□□□ -0.52
TRIM28-205ENST00000595028 P2RX4Q99571 388 aa11.81□□□□□ -0.52
TRIM28-205ENST00000595028 TSNAXQ99598 290 aaKnown RBP11.81□□□□□ -0.52
TRIM28-205ENST00000595028 ST6GALNAC5Q9BVH7 336 aa11.81□□□□□ -0.52
TRIM28-205ENST00000595028 SLC35D1Q9NTN3 355 aa11.81□□□□□ -0.52
TRIM28-205ENST00000595028 METTL1Q9UBP6 276 aaKnown RBP11.81□□□□□ -0.52
TRIM28-205ENST00000595028 FBXO7Q9Y3I1 522 aa11.81□□□□□ -0.52
TRIM28-205ENST00000595028 RBM7Q9Y580 266 aaKnown RBP11.81□□□□□ -0.52
TRIM28-205ENST00000595028 WSB1Q9Y6I7 421 aa11.81□□□□□ -0.52
TRIM28-205ENST00000595028 TRAV18A0A075B6X5 111 aa11.8□□□□□ -0.52
TRIM28-205ENST00000595028 CTXN2P0C2S0 81 aa11.8□□□□□ -0.52
TRIM28-205ENST00000595028 MYCNOSP40205 109 aa11.8□□□□□ -0.52
TRIM28-205ENST00000595028 CDX1P47902 265 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-205ENST00000595028 CRIP2P52943 208 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-205ENST00000595028 PSG5Q15238 335 aa11.8□□□□□ -0.52
TRIM28-205ENST00000595028 ECSCRQ19T08 205 aa11.8□□□□□ -0.52
TRIM28-205ENST00000595028 C19orf54Q5BKX5 351 aa11.8□□□□□ -0.52
TRIM28-205ENST00000595028 ZNF660Q6AZW8 331 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-205ENST00000595028 CROCCP3Q8IVE0 287 aa11.8□□□□□ -0.52
TRIM28-205ENST00000595028 FLYWCH2Q96CP2 140 aaKnown RBP11.8□□□□□ -0.52
TRIM28-205ENST00000595028 RAX2Q96IS3 184 aa11.8□□□□□ -0.52
TRIM28-205ENST00000595028 NECAP2Q9NVZ3 263 aa11.8□□□□□ -0.52
TRIM28-205ENST00000595028 ANXA10Q9UJ72 324 aa11.8□□□□□ -0.52
TRIM28-205ENST00000595028 SPATA2Q9UM82 520 aa11.8□□□□□ -0.52
TRIM28-205ENST00000595028 FCN1O00602 326 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 DUS4LO95620 317 aaKnown RBP11.79□□□□□ -0.52
TRIM28-205ENST00000595028 IGLV1-40P01703 118 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 RPS16P62249 146 aaKnown RBP11.79□□□□□ -0.52
TRIM28-205ENST00000595028 LSM3P62310 102 aaKnown RBP11.79□□□□□ -0.52
TRIM28-205ENST00000595028 CX3CL1P78423 397 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 DEFB136Q30KP8 78 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 FOXB2Q5VYV0 432 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 CNIH2Q6PI25 160 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 REC114Q7Z4M0 266 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 MINDY2Q8NBR6 621 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 ABHD5Q8WTS1 349 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 C4orf3Q8WVX3 66 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 TPSG1Q9NRR2 321 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 OR2W1Q9Y3N9 320 aa11.79□□□□□ -0.52
TRIM28-205ENST00000595028 SLC25A17O43808 307 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 CA2P00918 260 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 DUTP33316 252 aaKnown RBP11.78□□□□□ -0.52
TRIM28-205ENST00000595028 RPS19P39019 145 aaKnown RBP11.78□□□□□ -0.52
TRIM28-205ENST00000595028 TAGLNQ01995 201 aaKnown RBP11.78□□□□□ -0.52
TRIM28-205ENST00000595028 CBX3Q13185 183 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 RTL8BQ17RB0 113 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 VAX1Q5SQQ9 334 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 TCTEX1D1Q8N7M0 179 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 ADTRPQ96IZ2 230 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 HARBI1Q96MB7 349 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 DUX3Q96PT4 197 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 KLK15Q9H2R5 256 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 AUNIPQ9H7T9 357 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 DIABLOQ9NR28 239 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 A3GALT2U3KPV4 340 aa11.78□□□□□ -0.52
TRIM28-205ENST00000595028 TNCP24821 2201 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 CCL24O00175 119 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 SOX15O60248 233 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 IGLV2-23P01705 113 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 HLA-DQB1P01920 261 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 SMIM18P0DKX4 95 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 NFYAP23511 347 aaPredicted RBP11.77□□□□□ -0.53
TRIM28-205ENST00000595028 LUMP51884 338 aaPredicted RBP11.77□□□□□ -0.53
TRIM28-205ENST00000595028 TMEM177Q53S58 311 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 UBE2NLQ5JXB2 153 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 TMEM65Q6PI78 240 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 ZNF645Q8N7E2 425 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 BVESQ8NE79 360 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 BEST4Q8NFU0 473 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 DDB2Q92466 427 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 CLCC1Q96S66 551 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 FUNDC2Q9BWH2 189 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 GPR61Q9BZJ8 451 aa11.77□□□□□ -0.53
TRIM28-205ENST00000595028 AURKAIP1Q9NWT8 199 aaPredicted RBP11.77□□□□□ -0.53
TRIM28-205ENST00000595028 FOXA2Q9Y261 457 aaPredicted RBP11.77□□□□□ -0.53
TRIM28-205ENST00000595028 IGKV1D-13A0A0B4J2D9 117 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 A0A1W2PN81 502 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 LINC00473A8K010 186 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 J3QRK9 145 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 TUSC2O75896 110 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 IGKV1-13P0DP09 117 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 RRASP10301 218 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 EGR2P11161 476 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-205ENST00000595028 CHRNA7P36544 502 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 LGALS7P47929 136 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 NCS1P62166 190 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 FHL3Q13643 280 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 KIAA0141Q14154 515 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-205ENST00000595028 ZNF562Q6V9R5 426 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 PPP1R27Q86WC6 154 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 GVQW1Q8N7I0 195 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms