RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 SLC22A5O76082 557 aa13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 PPIFP30405 207 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 LGALS7P47929 136 aa13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 RPS16P62249 146 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 RTL8BQ17RB0 113 aa13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 PYHIN1Q6K0P9 492 aa13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 DRAXINQ8NBI3 349 aaPredicted RBP13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 MYOZ3Q8TDC0 251 aa13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 C4orf3Q8WVX3 66 aa13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 UBE2E2Q96LR5 201 aa13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 DIABLOQ9NR28 239 aa13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 SDHAF2Q9NX18 166 aa13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 METTL1Q9UBP6 276 aaKnown RBP13.89□□□□□ -0.19
SHKBP1-204ENST00000594862 TMEM235A6NFC5 223 aa13.88□□□□□ -0.19
SHKBP1-204ENST00000594862 CCL24O00175 119 aa13.88□□□□□ -0.19
SHKBP1-204ENST00000594862 IGLV1-40P01703 118 aa13.88□□□□□ -0.19
SHKBP1-204ENST00000594862 PSG5Q15238 335 aa13.88□□□□□ -0.19
SHKBP1-204ENST00000594862 ZNF260Q3ZCT1 412 aa13.88□□□□□ -0.19
SHKBP1-204ENST00000594862 CNIH2Q6PI25 160 aa13.88□□□□□ -0.19
SHKBP1-204ENST00000594862 ABHD5Q8WTS1 349 aa13.88□□□□□ -0.19
SHKBP1-204ENST00000594862 ST6GALNAC5Q9BVH7 336 aa13.88□□□□□ -0.19
SHKBP1-204ENST00000594862 SPATA2Q9UM82 520 aa13.88□□□□□ -0.19
SHKBP1-204ENST00000594862 IGKV1-16P04430 117 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 CLEC2LP0C7M8 214 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 CD40LGP29965 261 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 CX3CL1P78423 397 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 FOXB2Q5VYV0 432 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 ZNF562Q6V9R5 426 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 MINDY2Q8NBR6 621 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 OR5M8Q8NGP6 311 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 NUDCD2Q8WVJ2 157 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 RNF167Q9H6Y7 350 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 ANXA10Q9UJ72 324 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 FOXA2Q9Y261 457 aaPredicted RBP13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 WSB1Q9Y6I7 421 aa13.87□□□□□ -0.19
SHKBP1-204ENST00000594862 G3V318 75 aa13.86□□□□□ -0.19
SHKBP1-204ENST00000594862 LUMP51884 338 aaPredicted RBP13.86□□□□□ -0.19
SHKBP1-204ENST00000594862 ECSCRQ19T08 205 aa13.86□□□□□ -0.19
SHKBP1-204ENST00000594862 C18orf65Q6ZTR6 163 aa13.86□□□□□ -0.19
SHKBP1-204ENST00000594862 SLC25A38Q96DW6 304 aa13.86□□□□□ -0.19
SHKBP1-204ENST00000594862 RBMXL1Q96E39 390 aaKnown RBP13.86□□□□□ -0.19
SHKBP1-204ENST00000594862 YIPF6Q96EC8 236 aa13.86□□□□□ -0.19
SHKBP1-204ENST00000594862 RAX2Q96IS3 184 aa13.86□□□□□ -0.19
SHKBP1-204ENST00000594862 HARBI1Q96MB7 349 aa13.86□□□□□ -0.19
SHKBP1-204ENST00000594862 VSIG4Q9Y279 399 aa13.86□□□□□ -0.19
SHKBP1-204ENST00000594862 OR2W1Q9Y3N9 320 aa13.86□□□□□ -0.19
SHKBP1-204ENST00000594862 NOTCH3Q9UM47 2321 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 TRAV18A0A075B6X5 111 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 IGKV1D-8A0A087WSZ0 117 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 CA2P00918 260 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 CBX5P45973 191 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 RUNX1Q01196 453 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 AKIRIN2Q53H80 203 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 TMEM177Q53S58 311 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 C19orf54Q5BKX5 351 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 PPP1R27Q86WC6 154 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 ZNF645Q8N7E2 425 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 OR5H6Q8NGV6 325 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 ARPC1AQ92747 370 aa13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 ELF5Q9UKW6 265 aaPredicted RBP13.85□□□□□ -0.19
SHKBP1-204ENST00000594862 A0A1W2PN81 502 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 TRIM64CA6NLI5 447 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 SHOXO15266 292 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 SLC25A17O43808 307 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 CREBL2O60519 120 aaPredicted RBP13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 OR8U8P0C7N1 319 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 CHRNA7P36544 502 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 RAB9AP51151 201 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 ARPC4P59998 168 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 NDPQ00604 133 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 FHL3Q13643 280 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 VMA21Q3ZAQ7 101 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 LCNL1Q6ZST4 164 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 ZNF491Q8N8L2 437 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 OSR1Q8TAX0 266 aaPredicted RBP13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 KCTD12Q96CX2 325 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 S100A16Q96FQ6 103 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 TMEM68Q96MH6 324 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 SLA2Q9H6Q3 261 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 AURKAIP1Q9NWT8 199 aaPredicted RBP13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 MRPS7Q9Y2R9 242 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 PRELID3BQ9Y3B1 194 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 NUBP2Q9Y5Y2 271 aa13.84□□□□□ -0.19
SHKBP1-204ENST00000594862 SSX5O60225 188 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 HLA-DQB1P01920 261 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 DUTP33316 252 aaKnown RBP13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 RAB25P57735 213 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 EGFEM1PQ0D2K5 195 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 DCTN2Q13561 401 aaKnown RBP13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 ACTBL2Q562R1 376 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 UBE2NLQ5JXB2 153 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 UNQ5815/PRO19632Q6UWF5 114 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 BVESQ8NE79 360 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 BEST4Q8NFU0 473 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 MRAPQ8TCY5 172 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 DDB2Q92466 427 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 AUNIPQ9H7T9 357 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 FBXO7Q9Y3I1 522 aa13.83□□□□□ -0.2
SHKBP1-204ENST00000594862 H3BUA1 57 aa13.82□□□□□ -0.2
SHKBP1-204ENST00000594862 FCN1O00602 326 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms