RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 HOPXQ9BPY8 73 aaPredicted RBP2□□□□□ -2.09
VPS4B-203ENST00000588323 RSG1Q9BU20 258 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 MND1Q9BWT6 205 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 RDH14Q9HBH5 336 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 NOX3Q9HBY0 568 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 HMG20AQ9NP66 347 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 DNAJC27Q9NZQ0 273 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 GSKIPQ9P0R6 139 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 RAB22AQ9UL26 194 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 NDUFAF1Q9Y375 327 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 HEY1Q9Y5J3 304 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 ALG5Q9Y673 324 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 GOLGA4Q13439 2230 aaKnown RBP2□□□□□ -2.09
VPS4B-203ENST00000588323 COL5A1P20908 1838 aaPredicted RBP2□□□□□ -2.09
VPS4B-203ENST00000588323 LAMA4Q16363 1823 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 OTOGQ6ZRI0 2925 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 LRBAP50851 2863 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 ICE1Q9Y2F5 2266 aa2□□□□□ -2.09
VPS4B-203ENST00000588323 C2orf16Q68DN1 1984 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 MYH7BA7E2Y1 1941 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 COL1A2P08123 1366 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 CENPEQ02224 2701 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 SPENQ96T58 3664 aaKnown RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 IGLV1-50A0A075B6I6 118 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 IGHV5-51A0A0C4DH38 117 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 IGHV3-64DA0A0J9YX35 117 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 PINLYPA6NC86 204 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 RFPL4AA6NLU0 287 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 ZNF705GA8MUZ8 300 aaPredicted RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 LINC00587B1AMM8 73 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 KRBOX1C9JBD0 128 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 NDUFC2-KCTD14E9PQ53 114 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 F5H5T6 163 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 RFPL4AL1F8VTS6 287 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 J3QLI3 93 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 TXNDC9O14530 226 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 CCL16O15467 120 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 ARPC5O15511 151 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 NDUFS5O43920 106 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 MPZL2O60487 215 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 REM1O75628 298 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 SERPINB7O75635 380 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 MPZL1O95297 269 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 ORM1P02763 201 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 CDK1P06493 297 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 LIMS3P0CW19 117 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 LIMS4P0CW20 117 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 ZNF35P13682 527 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 ADRB3P13945 408 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 CELP19835 753 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 OGNP20774 298 aaKnown RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 ELK4P28324 431 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 EIF2B2P49770 351 aaKnown RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 ERVS71-1P61550 626 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 LSM6P62312 80 aaKnown RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 RAP1AP62834 184 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 TFAMQ00059 246 aaKnown RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 PSG7Q13046 419 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 PTGES3Q15185 160 aaKnown RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 SNRNP35Q16560 246 aaKnown RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 CEACAM16Q2WEN9 425 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 KCTD16Q68DU8 428 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 ELP2Q6IA86 826 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 NIPAL1Q6NVV3 410 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 TMEM205Q6UW68 189 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 Q6ZSR6 202 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 PCP2Q8IVA1 136 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 IFT20Q8IY31 132 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 Q8N9L7 120 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 OR51D1Q8NGF3 324 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 OR2V1Q8NHB1 315 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 C16orf78Q8WTQ4 265 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 C15orf40Q8WUR7 153 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 BLNKQ8WV28 456 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 DNAJC9Q8WXX5 260 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 GHSRQ92847 366 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 YIPF5Q969M3 257 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 SMIM12Q96EX1 92 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 MRPL48Q96GC5 212 aaKnown RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 KCNS1Q96KK3 526 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 FAM210BQ96KR6 192 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 BMFQ96LC9 184 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 OR4K3Q96R72 315 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 CAMK2N2Q96S95 79 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 VPS25Q9BRG1 176 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 TMEM109Q9BVC6 243 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 DDA1Q9BW61 102 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 SLC19A3Q9BZV2 496 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 IFI27L2Q9H2X8 130 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 EXOSC4Q9NPD3 245 aaKnown RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 SPANXB1Q9NS25 103 aaPredicted RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 RWDD2AQ9UIY3 292 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 ZNF223Q9UK11 482 aaPredicted RBP1.99□□□□□ -2.09
VPS4B-203ENST00000588323 PSG11Q9UQ72 335 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 HSPB11Q9Y547 144 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 ASB4Q9Y574 426 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 NUBP2Q9Y5Y2 271 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 CABIN1Q9Y6J0 2220 aa1.99□□□□□ -2.09
VPS4B-203ENST00000588323 AKAP9Q99996 3911 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms