RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ANKRD55Q3KP44 614 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 RPL39P5Q59GN2 51 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 CYB5R2Q6BCY4 276 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 ZNF695Q8IW36 515 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 SPAG16Q8N0X2 631 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 OR8H3Q8N146 312 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 OR5AN1Q8NGI8 311 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 OR51H1Q8NH63 302 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 RBPMSQ93062 196 aaKnown RBP12.41□□□□□ -0.42
SS18-215ENST00000580642 PPP1R14BQ96C90 147 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 C18orf12Q96KH6 178 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 C7orf69Q9H7B7 122 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 COMMD9Q9P000 198 aa12.41□□□□□ -0.42
SS18-215ENST00000580642 HECTD1Q9ULT8 2610 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 HPRT1P00492 218 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 APOA2P02652 100 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 CT45A6P0DMU7 189 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 CT45A5P0DMU8 189 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 CT45A7P0DMV0 189 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 VDAC1P21796 283 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 LGALS4P56470 323 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 RPL30P62888 115 aaKnown RBP12.4□□□□□ -0.42
SS18-215ENST00000580642 CYCSP99999 105 aaKnown RBP12.4□□□□□ -0.42
SS18-215ENST00000580642 RTL8BQ17RB0 113 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 FAM219AQ8IW50 185 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 WFDC11Q8NEX6 87 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 OR4S2Q8NH73 311 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 LSM10Q969L4 123 aaKnown RBP12.4□□□□□ -0.42
SS18-215ENST00000580642 RPEQ96AT9 228 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 MALSU1Q96EH3 234 aa12.4□□□□□ -0.42
SS18-215ENST00000580642 LINC00473A8K010 186 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 PFDN1O60925 122 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 OR2A4O95047 310 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 TGFAP01135 160 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 SLC25A6P12236 298 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 SRSF4Q08170 494 aaKnown RBP12.39□□□□□ -0.43
SS18-215ENST00000580642 FCN2Q15485 313 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 SP6Q3SY56 376 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 ZNF585BQ52M93 769 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 TPTE2P1Q5T6R2 138 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 AKAP14Q86UN6 197 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 PDPNQ86YL7 162 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 SELENOHQ8IZQ5 122 aaKnown RBP12.39□□□□□ -0.43
SS18-215ENST00000580642 OR5M8Q8NGP6 311 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 OR2A7Q96R45 310 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 SPIN2AQ99865 258 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 RNF5Q99942 180 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 SPIN2BQ9BPZ2 258 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 NABP2Q9BQ15 211 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 CACFD1Q9UGQ2 172 aa12.39□□□□□ -0.43
SS18-215ENST00000580642 YLPM1P49750 1951 aaKnown RBP12.38□□□□□ -0.43
SS18-215ENST00000580642 PRRC2AP48634 2157 aaKnown RBP12.38□□□□□ -0.43
SS18-215ENST00000580642 IGHV1-69DA0A0B4J2H0 117 aa12.38□□□□□ -0.43
SS18-215ENST00000580642 CENPVL3A0A0U1RRI6 287 aa12.38□□□□□ -0.43
SS18-215ENST00000580642 FAM90A9PA6NNJ1 464 aa12.38□□□□□ -0.43
SS18-215ENST00000580642 IGHV1-69P01742 117 aa12.38□□□□□ -0.43
SS18-215ENST00000580642 GIPP09681 153 aaPredicted RBP12.38□□□□□ -0.43
SS18-215ENST00000580642 ZNF16P17020 682 aaPredicted RBP12.38□□□□□ -0.43
SS18-215ENST00000580642 HABP2Q14520 560 aaPredicted RBP12.38□□□□□ -0.43
SS18-215ENST00000580642 GPR157Q5UAW9 335 aa12.38□□□□□ -0.43
SS18-215ENST00000580642 TMEM268Q5VZI3 342 aa12.38□□□□□ -0.43
SS18-215ENST00000580642 C1orf229Q6ZS94 237 aaPredicted RBP12.38□□□□□ -0.43
SS18-215ENST00000580642 ZNF383Q8NA42 475 aa12.38□□□□□ -0.43
SS18-215ENST00000580642 UXS1Q8NBZ7 420 aa12.38□□□□□ -0.43
SS18-215ENST00000580642 OR11H7Q8NGC8 314 aa12.38□□□□□ -0.43
SS18-215ENST00000580642 OSR1Q8TAX0 266 aaPredicted RBP12.38□□□□□ -0.43
SS18-215ENST00000580642 LHX4Q969G2 390 aa12.38□□□□□ -0.43
SS18-215ENST00000580642 MGAT4CQ9UBM8 478 aa12.38□□□□□ -0.43
SS18-215ENST00000580642 H0YJW9 148 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 NPFFO15130 113 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 CCNKO75909 580 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 LPAR6P43657 344 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 BRWD1-AS2P59051 145 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 POU2AF1Q16633 256 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 GSG1LQ6UXU4 331 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 OR4C13Q8NGP0 309 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 RRNAD1Q96FB5 475 aaKnown RBP12.37□□□□□ -0.43
SS18-215ENST00000580642 GPHA2Q96T91 129 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 NEURL2Q9BR09 285 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 MRPL20Q9BYC9 149 aaKnown RBP12.37□□□□□ -0.43
SS18-215ENST00000580642 ZNF436Q9C0F3 470 aaPredicted RBP12.37□□□□□ -0.43
SS18-215ENST00000580642 SLC35D1Q9NTN3 355 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 ZFP57Q9NU63 452 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 WASHC3Q9Y3C0 194 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 CREBBPQ92793 2442 aa12.37□□□□□ -0.43
SS18-215ENST00000580642 IGHV1-3A0A0C4DH29 117 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 GOSR2O14653 212 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 FCGR3BO75015 233 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 HRASP01112 189 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 FGF2P09038 288 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 NQO2P16083 231 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 CD1BP29016 333 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 LGALS7P47929 136 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 RAP2BP61225 183 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 KLRD1Q13241 179 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 TMEM177Q53S58 311 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 TCTE3Q8IZS6 198 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 SLC35G3Q8N808 338 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 DRAXINQ8NBI3 349 aaPredicted RBP12.36□□□□□ -0.43
SS18-215ENST00000580642 LHFPL5Q8TAF8 219 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms