RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 ZNF823P16415 610 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 ZNF25P17030 456 aaPredicted RBP5.61□□□□□ -1.51
VPS53-217ENST00000575100 ZNF32P17041 273 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 FGF9P31371 208 aaPredicted RBP5.61□□□□□ -1.51
VPS53-217ENST00000575100 RPL31P62899 125 aaKnown RBP5.61□□□□□ -1.51
VPS53-217ENST00000575100 FAM120AOSQ5T036 256 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 OR8G2PQ6IF36 304 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 MRPL52Q86TS9 123 aaKnown RBP5.61□□□□□ -1.51
VPS53-217ENST00000575100 PXT1Q8NFP0 134 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 OR51D1Q8NGF3 324 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 OR6K3Q8NGY3 331 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 SYNPRQ8TBG9 265 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 SMIM12Q96EX1 92 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 OR8B4Q96RC9 309 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 RNF167Q9H6Y7 350 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 GNG8Q9UK08 70 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 ITPR3Q14573 2671 aa5.61□□□□□ -1.51
VPS53-217ENST00000575100 DISC1C4P0D8 188 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 ZNF670-ZNF695F2Z2N8 137 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 MSTNO14793 375 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 SRSF10O75494 262 aaKnown RBP5.6□□□□□ -1.51
VPS53-217ENST00000575100 TSPAN15O95858 294 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 NHLRC4P0CG21 123 aaPredicted RBP5.6□□□□□ -1.51
VPS53-217ENST00000575100 SLC6A1P30531 599 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 OPRL1P41146 370 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 HIST1H3AP68431 136 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 PSG4Q00888 419 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 OR5I1Q13606 314 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 SPIN3Q5JUX0 258 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 HIST2H3PS2Q5TEC6 136 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 PVRIGQ6DKI7 326 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 ZNF774Q6NX45 483 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 HIST2H3AQ71DI3 136 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 ZNF627Q7L945 461 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 NAA40Q86UY6 237 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 ZNF584Q8IVC4 421 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 OR1K1Q8NGR3 316 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 TMEM203Q969S6 136 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 SLAMF6Q96DU3 332 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 POM121L2Q96KW2 1035 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 TSNAXQ99598 290 aaKnown RBP5.6□□□□□ -1.51
VPS53-217ENST00000575100 FOXC2Q99958 501 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 TMEM208Q9BTX3 173 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 B3GAT2Q9NPZ5 323 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 MSRB1Q9NZV6 116 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 C11orf21Q9P2W6 132 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 POLR1DQ9Y2S0 133 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 A0A1B0GW55 424 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 H3BSH0 61 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 GAGE7O76087 117 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 DUX4L2P0CJ85 424 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 DUX4L3P0CJ86 424 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 DUX4L4P0CJ87 422 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 DUX4L5P0CJ88 424 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 DUX4L6P0CJ89 424 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 DUX4L7P0CJ90 424 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 GAGE12FP0CL80 117 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 GAGE12GP0CL81 117 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 GAGE12IP0CL82 117 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 CD99P14209 185 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 CELP19835 753 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 GABRR1P24046 479 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 MPGP29372 298 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 CHRNB4P30926 498 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 GNRHRP30968 328 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 S100A7P31151 101 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 TFPI2P48307 235 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 LSM3P62310 102 aaKnown RBP5.6□□□□□ -1.51
VPS53-217ENST00000575100 RPS25P62851 125 aaKnown RBP5.6□□□□□ -1.51
VPS53-217ENST00000575100 FAM3AP98173 230 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 GAGE4Q13068 117 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 RNASE10Q5GAN6 216 aaKnown RBP5.6□□□□□ -1.51
VPS53-217ENST00000575100 DUX4L9Q6RFH8 374 aaPredicted RBP5.6□□□□□ -1.51
VPS53-217ENST00000575100 ADAMTSL5Q6ZMM2 481 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 SLC16A13Q7RTY0 426 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 TGIF2LYQ8IUE0 185 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 RDH10Q8IZV5 341 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 BPIFB2Q8N4F0 458 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 ZNF433Q8N7K0 673 aaPredicted RBP5.6□□□□□ -1.51
VPS53-217ENST00000575100 YIPF7Q8N8F6 280 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 HPSE2Q8WWQ2 592 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 PGLYRP3Q96LB9 341 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 PDCD1LG2Q9BQ51 273 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 OR51E2Q9H255 320 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 SLC2A9Q9NRM0 540 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 B3GNT2Q9NY97 397 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 DUX4Q9UBX2 424 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 PROCRQ9UNN8 238 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 SLC7A11Q9UPY5 501 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 TMEM14AQ9Y6G1 99 aa5.6□□□□□ -1.51
VPS53-217ENST00000575100 SPG11Q96JI7 2443 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 NAV3Q8IVL0 2385 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 RNF212BA8MTL3 300 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 CDK2AP2O75956 126 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 CST2P09228 141 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 GTF2F2P13984 249 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 PI3P19957 117 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 GADD45AP24522 165 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 CCKARP32238 428 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 ARL16Q0P5N6 197 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms