RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 IGF1P05019 195 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 FOXE3Q13461 319 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 IGSF11Q5DX21 431 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 HACD4Q5VWC8 232 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 TMEM65Q6PI78 240 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 REC114Q7Z4M0 266 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 NR2C2APQ86WQ0 139 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 PDPNQ86YL7 162 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 ZNF695Q8IW36 515 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 DRAXINQ8NBI3 349 aaPredicted RBP6.37□□□□□ -1.39
VPS53-214ENST00000572607 NPBQ8NG41 125 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 OR5AN1Q8NGI8 311 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 MAFIPQ8WZ33 124 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 RCC1LQ96I51 464 aaKnown RBP6.37□□□□□ -1.39
VPS53-214ENST00000572607 TSNAXQ99598 290 aaKnown RBP6.37□□□□□ -1.39
VPS53-214ENST00000572607 RNF5Q99942 180 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 ST6GALNAC5Q9BVH7 336 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 TOLLIPQ9H0E2 274 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 OR2D2Q9H210 308 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 DCSTAMPQ9H295 470 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 OR51J1Q9H342 316 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.37□□□□□ -1.39
VPS53-214ENST00000572607 DIABLOQ9NR28 239 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 SLC35D1Q9NTN3 355 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 ZNF580Q9UK33 172 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 KCNK7Q9Y2U2 307 aa6.37□□□□□ -1.39
VPS53-214ENST00000572607 A0A0A6YYH2 397 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 IGHV7-81A0A0B4J1V7 117 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 TRAV41A0A0B4J266 112 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 TMEM235A6NFC5 223 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 A6NJ64 397 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 ATP6V0E1O15342 81 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 NDUFA3O95167 84 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 CLEC2LP0C7M8 214 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 RRASP10301 218 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 CNTFRP26992 372 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 CD40LGP29965 261 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 MYCNOSP40205 109 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 THBS3P49746 956 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 RAB25P57735 213 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 ARPC4P59998 168 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 RPS16P62249 146 aaKnown RBP6.36□□□□□ -1.39
VPS53-214ENST00000572607 TAGLNQ01995 201 aaKnown RBP6.36□□□□□ -1.39
VPS53-214ENST00000572607 TMEM267Q0VDI3 215 aaPredicted RBP6.36□□□□□ -1.39
VPS53-214ENST00000572607 RTL8BQ17RB0 113 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 ECSCRQ19T08 205 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 BEAN1Q3B7T3 259 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 ZNF660Q6AZW8 331 aaPredicted RBP6.36□□□□□ -1.39
VPS53-214ENST00000572607 Q6ZS49 121 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 WFDC9Q8NEX5 89 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 NUDCD2Q8WVJ2 157 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 FLYWCH2Q96CP2 140 aaKnown RBP6.36□□□□□ -1.39
VPS53-214ENST00000572607 RITA1Q96K30 269 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 MCRIP2Q9BUT9 160 aaKnown RBP6.36□□□□□ -1.39
VPS53-214ENST00000572607 FBXL15Q9H469 300 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 RNF167Q9H6Y7 350 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 NECAP2Q9NVZ3 263 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 METTL1Q9UBP6 276 aaKnown RBP6.36□□□□□ -1.39
VPS53-214ENST00000572607 GAB2Q9UQC2 676 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 WSB1Q9Y6I7 421 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 COL7A1Q02388 2944 aa6.36□□□□□ -1.39
VPS53-214ENST00000572607 TRAV18A0A075B6X5 111 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 SLC22A5O76082 557 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 IGHG4P01861 327 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 IGLL1P15814 213 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 CDX1P47902 265 aaPredicted RBP6.35□□□□□ -1.39
VPS53-214ENST00000572607 LUMP51884 338 aaPredicted RBP6.35□□□□□ -1.39
VPS53-214ENST00000572607 LSM3P62310 102 aaKnown RBP6.35□□□□□ -1.39
VPS53-214ENST00000572607 CFHR3Q02985 330 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 PSG5Q15238 335 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 ZNF260Q3ZCT1 412 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 KPRPQ5T749 579 aaPredicted RBP6.35□□□□□ -1.39
VPS53-214ENST00000572607 CNIH2Q6PI25 160 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 H1FOOQ8IZA3 346 aaPredicted RBP6.35□□□□□ -1.39
VPS53-214ENST00000572607 TCTEX1D1Q8N7M0 179 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 LINC00482Q8N8I6 264 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 ZNF383Q8NA42 475 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 RBMXL1Q96E39 390 aaKnown RBP6.35□□□□□ -1.39
VPS53-214ENST00000572607 YIPF6Q96EC8 236 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 S100A16Q96FQ6 103 aaKnown RBP6.35□□□□□ -1.39
VPS53-214ENST00000572607 ADTRPQ96IZ2 230 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 CLCC1Q96S66 551 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 SDHAF2Q9NX18 166 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 ANXA10Q9UJ72 324 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 SPATA2Q9UM82 520 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 A3GALT2U3KPV4 340 aa6.35□□□□□ -1.39
VPS53-214ENST00000572607 PLXNB1O43157 2135 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 A0A1W2PN81 502 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 J3QRK9 145 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 SHOXO15266 292 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 SLC25A17O43808 307 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 CREBL2O60519 120 aaPredicted RBP6.34□□□□□ -1.39
VPS53-214ENST00000572607 CNIH1O95406 144 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 CA2P00918 260 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 IGKV1-16P04430 117 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 NFYAP23511 347 aaPredicted RBP6.34□□□□□ -1.39
VPS53-214ENST00000572607 CHRNA7P36544 502 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 CBX5P45973 191 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 LGALS7P47929 136 aa6.34□□□□□ -1.39
VPS53-214ENST00000572607 GNB1P62873 340 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms