RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 MLLT11Q13015 90 aaPredicted RBP4.87□□□□□ -1.63
VPS53-212ENST00000572259 DYNC1I2Q13409 638 aaKnown RBP4.87□□□□□ -1.63
VPS53-212ENST00000572259 RAB31Q13636 194 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 GINS1Q14691 196 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 FFAR4Q5NUL3 377 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 FAM120AOSQ5T036 256 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 WDR25Q64LD2 544 aaPredicted RBP4.87□□□□□ -1.63
VPS53-212ENST00000572259 ZFP1Q6P2D0 407 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 DUX4L9Q6RFH8 374 aaPredicted RBP4.87□□□□□ -1.63
VPS53-212ENST00000572259 SMIM15Q7Z3B0 74 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 ZNF525Q8N782 197 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 SLC26A10Q8NG04 563 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 OR2D3Q8NGH3 330 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 KLF14Q8TD94 323 aaPredicted RBP4.87□□□□□ -1.63
VPS53-212ENST00000572259 APH1BQ8WW43 257 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 SPTSSAQ969W0 71 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 APOBEC3DQ96AK3 386 aaPredicted RBP4.87□□□□□ -1.63
VPS53-212ENST00000572259 DGCR14Q96DF8 476 aaKnown RBP4.87□□□□□ -1.63
VPS53-212ENST00000572259 LYZL4Q96KX0 146 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 C2orf48Q96LS8 159 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 NIPSNAP1Q9BPW8 284 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 HCAR1Q9BXC0 346 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 IFT46Q9NQC8 304 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 CMC2Q9NRP2 79 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 ARMC1Q9NVT9 282 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 DUX4Q9UBX2 424 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 SPATA2Q9UM82 520 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 ORC6Q9Y5N6 252 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 ZANQ9Y493 2812 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 IGLV5-37A0A075B6J1 123 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 KIR2DS1A0A191URI9 304 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 FUOMA2VDF0 154 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 OR2AT4A6NND4 320 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 F5H5K5 113 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 ZNF593O00488 134 aaPredicted RBP4.86□□□□□ -1.63
VPS53-212ENST00000572259 RER1O15258 196 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 MPZL1O95297 269 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 IGHV2-5P01817 119 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 ISG15P05161 165 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 GNAO1P09471 354 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 C8orf88P0DMB2 117 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 CT45A6P0DMU7 189 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 CT45A5P0DMU8 189 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 CT45A7P0DMV0 189 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 IGFBP3P17936 291 aaPredicted RBP4.86□□□□□ -1.63
VPS53-212ENST00000572259 PRKACGP22612 351 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 DHODHQ02127 395 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 LOXL1Q08397 574 aaPredicted RBP4.86□□□□□ -1.63
VPS53-212ENST00000572259 KIR2DS1Q14954 304 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 ATP6AP1Q15904 470 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 CT45A1Q5HYN5 189 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 TEX30Q5JUR7 227 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 DNM1P46Q6ZS02 220 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 CALHM1Q8IU99 346 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 Q8N9P0 234 aaPredicted RBP4.86□□□□□ -1.63
VPS53-212ENST00000572259 CT45A3Q8NHU0 189 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 SLC25A40Q8TBP6 338 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 C10orf105Q8TEF2 133 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 TRUB1Q8WWH5 349 aaKnown RBP4.86□□□□□ -1.63
VPS53-212ENST00000572259 RDH5Q92781 318 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 TSNAXQ99598 290 aaKnown RBP4.86□□□□□ -1.63
VPS53-212ENST00000572259 ATF6BQ99941 703 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 PLA2G12AQ9BZM1 189 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 OR2J1Q9GZK6 312 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 C6orf62Q9GZU0 229 aaPredicted RBP4.86□□□□□ -1.63
VPS53-212ENST00000572259 TPK1Q9H3S4 243 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 KLK11Q9UBX7 282 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 MGAT4AQ9UM21 535 aa4.86□□□□□ -1.63
VPS53-212ENST00000572259 NOP16Q9Y3C1 178 aaKnown RBP4.86□□□□□ -1.63
VPS53-212ENST00000572259 IGHV4-30-2A0A087WSY4 118 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.85□□□□□ -1.63
VPS53-212ENST00000572259 ZNF878C9JN71 531 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 TNFSF12O43508 249 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 ENSAO43768 121 aaKnown RBP4.85□□□□□ -1.63
VPS53-212ENST00000572259 SSNA1O43805 119 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 LY6G6DO95868 133 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 NGFP01138 241 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 OXTP01178 125 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 ZNF12P17014 697 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 SPI1P17947 270 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 CELP19835 753 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 TBPP20226 339 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 BCL3P20749 454 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 FCGR2CP31995 323 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 PYCR1P32322 319 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 TGFBR2P37173 567 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 GPR6P46095 362 aaPredicted RBP4.85□□□□□ -1.63
VPS53-212ENST00000572259 ERFP50548 548 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 GRB2P62993 217 aaKnown RBP4.85□□□□□ -1.63
VPS53-212ENST00000572259 HIST1H3AP68431 136 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 CDK5Q00535 292 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 ZNF154Q13106 437 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 GGTLC2Q14390 218 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 ACSM3Q53FZ2 586 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 KLHL12Q53G59 568 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 HIST2H3PS2Q5TEC6 136 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 CYB5R2Q6BCY4 276 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 WDR82Q6UXN9 313 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 HIST2H3AQ71DI3 136 aa4.85□□□□□ -1.63
VPS53-212ENST00000572259 LRP11Q86VZ4 500 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms