RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 RRASP10301 218 aa16.47■□□□□ 0.23
VPS53-210ENST00000571456 THBS3P49746 956 aa16.47■□□□□ 0.23
VPS53-210ENST00000571456 HES1Q14469 280 aa16.47■□□□□ 0.23
VPS53-210ENST00000571456 LY6EQ16553 131 aa16.47■□□□□ 0.23
VPS53-210ENST00000571456 PYDC2Q56P42 97 aa16.47■□□□□ 0.23
VPS53-210ENST00000571456 RPL39P5Q59GN2 51 aa16.47■□□□□ 0.23
VPS53-210ENST00000571456 Q8N402 240 aa16.47■□□□□ 0.23
VPS53-210ENST00000571456 MOB3AQ96BX8 217 aa16.47■□□□□ 0.23
VPS53-210ENST00000571456 HSD17B10Q99714 261 aaKnown RBP16.47■□□□□ 0.23
VPS53-210ENST00000571456 THAP7Q9BT49 309 aaPredicted RBP16.47■□□□□ 0.23
VPS53-210ENST00000571456 MRPL20Q9BYC9 149 aaKnown RBP16.47■□□□□ 0.23
VPS53-210ENST00000571456 TNFRSF19Q9NS68 423 aa16.47■□□□□ 0.23
VPS53-210ENST00000571456 M0R1X1 148 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 FGF16O43320 207 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 FCER2P06734 321 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 AKAIN1P0CW23 69 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 CT45A6P0DMU7 189 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 CT45A5P0DMU8 189 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 CT45A7P0DMV0 189 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 TMEM11P17152 192 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 AADACP22760 399 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 CBX3Q13185 183 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 RNASE12Q5GAN4 147 aaKnown RBP16.46■□□□□ 0.23
VPS53-210ENST00000571456 STEAP1BQ6NZ63 245 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 PDPNQ86YL7 162 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 S100ZQ8WXG8 99 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 ZNF2Q9BSG1 426 aaPredicted RBP16.46■□□□□ 0.23
VPS53-210ENST00000571456 SLC25A33Q9BSK2 321 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 WASHC3Q9Y3C0 194 aa16.46■□□□□ 0.23
VPS53-210ENST00000571456 ANKRD20A5PA0PJZ0 165 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 PROP1O75360 226 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 RAB3DO95716 219 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 CD3DP04234 171 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 FAUP35544 74 aaKnown RBP16.45■□□□□ 0.22
VPS53-210ENST00000571456 ECI1P42126 302 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 ZNF79Q15937 498 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 C11orf88Q6PI97 169 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 ZNF66Q6ZN08 573 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 OR4C13Q8NGP0 309 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 OR4F5Q8NH21 305 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 EAF1Q96JC9 268 aaPredicted RBP16.45■□□□□ 0.22
VPS53-210ENST00000571456 SLC5A7Q9GZV3 580 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 MOB4Q9Y3A3 225 aa16.45■□□□□ 0.22
VPS53-210ENST00000571456 DISC1C4P0D8 188 aa16.44■□□□□ 0.22
VPS53-210ENST00000571456 TSPAN9O75954 239 aa16.44■□□□□ 0.22
VPS53-210ENST00000571456 S100GP29377 79 aa16.44■□□□□ 0.22
VPS53-210ENST00000571456 UCP3P55916 312 aa16.44■□□□□ 0.22
VPS53-210ENST00000571456 CCBE1Q6UXH8 406 aaPredicted RBP16.44■□□□□ 0.22
VPS53-210ENST00000571456 Q8N6K4 173 aa16.44■□□□□ 0.22
VPS53-210ENST00000571456 SRRQ9GZT4 340 aa16.44■□□□□ 0.22
VPS53-210ENST00000571456 PRELID3BQ9Y3B1 194 aa16.44■□□□□ 0.22
VPS53-210ENST00000571456 IGKV1D-13A0A0B4J2D9 117 aa16.43■□□□□ 0.22
VPS53-210ENST00000571456 H0YJW9 148 aa16.43■□□□□ 0.22
VPS53-210ENST00000571456 IGKV1-13P0DP09 117 aa16.43■□□□□ 0.22
VPS53-210ENST00000571456 DUTP33316 252 aaKnown RBP16.43■□□□□ 0.22
VPS53-210ENST00000571456 RTL8BQ17RB0 113 aa16.43■□□□□ 0.22
VPS53-210ENST00000571456 CMTM1Q8IZ96 169 aa16.43■□□□□ 0.22
VPS53-210ENST00000571456 SECTM1Q8WVN6 248 aa16.43■□□□□ 0.22
VPS53-210ENST00000571456 PRRT1Q99946 306 aa16.43■□□□□ 0.22
VPS53-210ENST00000571456 H7C2Y5 167 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 CHST1O43916 411 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 KIR2DS2P43631 304 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 FXYD4P59646 89 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 CATR1Q13166 79 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 TMEM219Q86XT9 240 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 SLC38A6Q8IZM9 456 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 TOMM5Q8N4H5 51 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 BVESQ8NE79 360 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 TRIM63Q969Q1 353 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 ZNF486Q96H40 463 aaPredicted RBP16.42■□□□□ 0.22
VPS53-210ENST00000571456 TINAGL1Q9GZM7 467 aaPredicted RBP16.42■□□□□ 0.22
VPS53-210ENST00000571456 PRSS22Q9GZN4 317 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 C16orf95Q9H693 158 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 MMP24Q9Y5R2 645 aa16.42■□□□□ 0.22
VPS53-210ENST00000571456 IGHV3-72A0A0B4J1Y9 119 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 IGLV2-14P01704 120 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 CD24P25063 80 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 RAG2P55895 527 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 LHFPL1Q86WI0 220 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 TCTEX1D1Q8N7M0 179 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 ZNF383Q8NA42 475 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 TERB2Q8NHR7 220 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 BEX1Q9HBH7 125 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 SLC35D1Q9NTN3 355 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 SLC2A8Q9NY64 477 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 SCP2D1Q9UJQ7 156 aa16.41■□□□□ 0.22
VPS53-210ENST00000571456 M0QYG6 137 aa16.4■□□□□ 0.22
VPS53-210ENST00000571456 GPR31O00270 319 aa16.4■□□□□ 0.22
VPS53-210ENST00000571456 SPDEFO95238 335 aa16.4■□□□□ 0.22
VPS53-210ENST00000571456 AMY2AP04746 511 aa16.4■□□□□ 0.22
VPS53-210ENST00000571456 LGALS7P47929 136 aa16.4■□□□□ 0.22
VPS53-210ENST00000571456 SURF2Q15527 256 aaPredicted RBP16.4■□□□□ 0.22
VPS53-210ENST00000571456 TRIQKQ629K1 86 aa16.4■□□□□ 0.22
VPS53-210ENST00000571456 KCTD9Q7L273 389 aa16.4■□□□□ 0.22
VPS53-210ENST00000571456 Q8N2B8 174 aa16.4■□□□□ 0.22
VPS53-210ENST00000571456 CD300LFQ8TDQ1 290 aa16.4■□□□□ 0.22
VPS53-210ENST00000571456 DDB2Q92466 427 aa16.4■□□□□ 0.22
VPS53-210ENST00000571456 FLYWCH2Q96CP2 140 aaKnown RBP16.4■□□□□ 0.22
VPS53-210ENST00000571456 TSNAXQ99598 290 aaKnown RBP16.4■□□□□ 0.22
VPS53-210ENST00000571456 CCL28Q9NRJ3 127 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms