RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PRAMEF6Q5VXH4 476 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 FAM103A1Q9BTL3 118 aaKnown RBP12.25□□□□□ -0.45
VPS35-210ENST00000568784 DDA1Q9BW61 102 aa12.25□□□□□ -0.45
VPS35-210ENST00000568784 PIGBOS1A0A0B4J2F0 54 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 OR5B21A6NL26 309 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 SLC31A2O15432 143 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 GZMBP10144 247 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 HOXC12P31275 282 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 CASP6P55212 293 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 TOMM20LQ6UXN7 152 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 CYP2G1PQ6ZSU1 146 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 TCF23Q7RTU1 214 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 SCCPDHQ8NBX0 429 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 OR2M7Q8NG81 312 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 ZDHHC11Q9H8X9 412 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 PTPRZ1P23471 2315 aaPredicted RBP12.24□□□□□ -0.45
VPS35-210ENST00000568784 ODAMA1E959 279 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 KITLGP21583 273 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 ATP5G3P48201 142 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 DAZAP2Q15038 168 aaPredicted RBP12.24□□□□□ -0.45
VPS35-210ENST00000568784 VKORC1L1Q8N0U8 176 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 MS4A10Q96PG2 267 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 DERL1Q9BUN8 251 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 C17orf98A8MV24 154 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 K7ESF4 209 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 FCGR3BO75015 233 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 PAX5Q02548 391 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 TBC1D28Q2M2D7 210 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 ZNF585BQ52M93 769 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 SGMS2Q8NHU3 365 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 NANOS1Q8WY41 292 aaKnown RBP12.24□□□□□ -0.45
VPS35-210ENST00000568784 POLDIP2Q9Y2S7 368 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 MPC1Q9Y5U8 109 aa12.24□□□□□ -0.45
VPS35-210ENST00000568784 ACTL6BO94805 426 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 WNT5AP41221 380 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 SSTP61278 116 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 P2RX4Q99571 388 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 DCTN5Q9BTE1 182 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 TRBV24-1A0A075B6N3 115 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 C17orf112F2Z3M2 114 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 GNB2P62879 340 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 ZNF90Q03938 601 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 BAGE3Q86Y29 109 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 BAGE2Q86Y30 109 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 MBD3L1Q8WWY6 194 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 PSMG3Q9BT73 122 aaPredicted RBP12.23□□□□□ -0.45
VPS35-210ENST00000568784 OR4A8P0C604 315 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 C1QTNF9P0C862 333 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 SLC10A1Q14973 349 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 POM121L2Q96KW2 1035 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 FAM173AQ9BQD7 235 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 FKBP11Q9NYL4 201 aa12.23□□□□□ -0.45
VPS35-210ENST00000568784 LAMTOR5O43504 91 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 HOXA6P31267 233 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 SSTR5P35346 364 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 NUBP1P53384 320 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 RPL30P62888 115 aaKnown RBP12.22□□□□□ -0.45
VPS35-210ENST00000568784 ACOT6Q3I5F7 207 aaPredicted RBP12.22□□□□□ -0.45
VPS35-210ENST00000568784 ZNF295-AS1Q8N0V1 137 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 SPSB4Q96A44 273 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 IMMP2LQ96T52 175 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 WDFY4Q6ZS81 3184 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 F6UZH7 168 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 HAND1O96004 215 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 MAS1LP35410 378 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 CNN1P51911 297 aaKnown RBP12.22□□□□□ -0.45
VPS35-210ENST00000568784 SLC35B1P78383 322 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 JOSD1Q15040 202 aaPredicted RBP12.22□□□□□ -0.45
VPS35-210ENST00000568784 TIPARPQ7Z3E1 657 aaKnown RBP12.22□□□□□ -0.45
VPS35-210ENST00000568784 EXPH5Q8NEV8 1989 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 TIMM8AO60220 97 aaPredicted RBP12.22□□□□□ -0.45
VPS35-210ENST00000568784 LMO1P25800 156 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 Q6ZSR3 168 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 TMEM251Q8N6I4 163 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 OR4A16Q8NH70 328 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 SLC25A40Q8TBP6 338 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 GTF3AQ92664 365 aaKnown RBP12.22□□□□□ -0.45
VPS35-210ENST00000568784 LSM10Q969L4 123 aaKnown RBP12.22□□□□□ -0.45
VPS35-210ENST00000568784 RYDENQ9NUL5 291 aaKnown RBP12.22□□□□□ -0.45
VPS35-210ENST00000568784 DUSP13Q9UII6 198 aa12.22□□□□□ -0.45
VPS35-210ENST00000568784 TRAV1-1A0A0B4J248 108 aa12.21□□□□□ -0.45
VPS35-210ENST00000568784 AGFG2O95081 481 aa12.21□□□□□ -0.45
VPS35-210ENST00000568784 IQCJQ1A5X6 159 aa12.21□□□□□ -0.45
VPS35-210ENST00000568784 TTTY12Q9BZ98 90 aa12.21□□□□□ -0.45
VPS35-210ENST00000568784 HBZP02008 142 aa12.21□□□□□ -0.45
VPS35-210ENST00000568784 RND2P52198 227 aa12.21□□□□□ -0.45
VPS35-210ENST00000568784 SERTAD4Q9NUC0 356 aa12.21□□□□□ -0.45
VPS35-210ENST00000568784 SPTA1P02549 2419 aa12.21□□□□□ -0.45
VPS35-210ENST00000568784 TMEM30CPA0ZSE6 113 aa12.21□□□□□ -0.46
VPS35-210ENST00000568784 MBP02144 154 aa12.21□□□□□ -0.46
VPS35-210ENST00000568784 SAXO1Q8IYX7 474 aa12.21□□□□□ -0.46
VPS35-210ENST00000568784 TMEM256Q8N2U0 113 aa12.21□□□□□ -0.46
VPS35-210ENST00000568784 WDYHV1Q96HA8 205 aa12.21□□□□□ -0.46
VPS35-210ENST00000568784 IL17BQ9UHF5 180 aa12.21□□□□□ -0.46
VPS35-210ENST00000568784 PAM16Q9Y3D7 125 aa12.21□□□□□ -0.46
VPS35-210ENST00000568784 FOSL1P15407 271 aa12.21□□□□□ -0.46
VPS35-210ENST00000568784 ZFP36L1Q07352 338 aaKnown RBP12.21□□□□□ -0.46
VPS35-210ENST00000568784 VHLLQ6RSH7 139 aa12.21□□□□□ -0.46
VPS35-210ENST00000568784 TMEM105Q8N8V8 129 aa12.21□□□□□ -0.46
VPS35-210ENST00000568784 EREGO14944 169 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms