RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 DYNC2H1Q8NCM8 4307 aaKnown RBP2.23□□□□□ -2.05
VPS35-209ENST00000568642 IGHV4-4A0A075B6R2 117 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 IGHV3OR16-13A0A075B7E8 117 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 TRAV8-4A0A0B4J246 113 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 A0A1W2PRE2 83 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 RPL37AP8A6NKH3 93 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 ZNF850A8MQ14 1090 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 ATP6V1G2-DDX39BF2Z307 99 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 F8W036 122 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 INMT-MINDY4F8WBC2 141 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 BHLHE40O14503 412 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 CCNKO75909 580 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 KBTBD11O94819 623 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 MOSP00540 346 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 P01737 135 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 IGHV3-48P01763 117 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 C1QCP02747 245 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 SNRPCP09234 159 aaKnown RBP2.23□□□□□ -2.05
VPS35-209ENST00000568642 GIPP09681 153 aaPredicted RBP2.23□□□□□ -2.05
VPS35-209ENST00000568642 OR56A5P0C7T3 313 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 HIST1H1TP22492 207 aaPredicted RBP2.23□□□□□ -2.05
VPS35-209ENST00000568642 SRP9P49458 86 aaKnown RBP2.23□□□□□ -2.05
VPS35-209ENST00000568642 VSX2P58304 361 aaPredicted RBP2.23□□□□□ -2.05
VPS35-209ENST00000568642 DNAJB13P59910 316 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 RPS23P62266 143 aaKnown RBP2.23□□□□□ -2.05
VPS35-209ENST00000568642 RHOBP62745 196 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 EMX1Q04741 257 aaPredicted RBP2.23□□□□□ -2.05
VPS35-209ENST00000568642 INCA1Q0VD86 236 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 PNOCQ13519 176 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 RSU1Q15404 277 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 CDNFQ49AH0 187 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 CLEC12AQ5QGZ9 265 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 SLC25A30Q5SVS4 291 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 ZNF684Q5T5D7 378 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 ANKRD22Q5VYY1 191 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 TEX36Q5VZQ5 186 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 OTPQ5XKR4 325 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 TMEM205Q6UW68 189 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 UNQ9165/PRO28630Q6UXU0 137 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 CLEC20AQ6ZU45 233 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 FAM220AQ7Z4H9 259 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 OAFQ86UD1 273 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 CALHM3Q86XJ0 350 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 ZBTB8OSQ8IWT0 167 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 CADM2Q8N3J6 435 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 GPR26Q8NDV2 337 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 OR51S1Q8NGJ8 323 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 LHFPL5Q8TAF8 219 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 FAM104AQ969W3 186 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 PTX4Q96A99 478 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 HAUS1Q96CS2 278 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 DNAJC30Q96LL9 226 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 PPP1R2P1Q96PQ5 205 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 PHB2Q99623 299 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 MARVELD1Q9BSK0 173 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 BIN3Q9NQY0 253 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 RASL12Q9NYN1 266 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 ZNF225Q9UK10 706 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 POLR1DQ9Y2S0 133 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 UGT2A1Q9Y4X1 527 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 SNX10Q9Y5X0 201 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 HEATR5AQ86XA9 2040 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 MED12Q93074 2177 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 DNAH1Q9P2D7 4330 aa2.23□□□□□ -2.05
VPS35-209ENST00000568642 A0A0G2JMP0 313 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 PQLC2LA1A4F0 135 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 C9orf170A2RU37 121 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 C5orf63A6NC05 138 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 FAM183AA6NL82 134 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 SHISA9B4DS77 424 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 RDH16O75452 317 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 REM1O75628 298 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 APOC1P02654 83 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 TTRP02766 147 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 APODP05090 189 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 IL3P08700 152 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 MRPL3P09001 348 aaKnown RBP2.22□□□□□ -2.05
VPS35-209ENST00000568642 ZSCAN5DPP0CG00 497 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 SULT1A3P0DMM9 295 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 SULT1A4P0DMN0 295 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 IGHV3-43DP0DP04 118 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 CTLA4P16410 223 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 MYL12AP19105 171 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 PRKACGP22612 351 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 GCKP35557 465 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 NCBP2P52298 156 aaKnown RBP eCLIP2.22□□□□□ -2.05
VPS35-209ENST00000568642 MTPNP58546 118 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 HIST1H3AP68431 136 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 BTN3A2P78410 334 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 H3F3AP84243 136 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 FKBP3Q00688 224 aaKnown RBP2.22□□□□□ -2.05
VPS35-209ENST00000568642 CDK10Q15131 360 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 CLEC12BQ2HXU8 276 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 GSG1Q2KHT4 349 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 PLPPR5Q32ZL2 321 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 SMIM21Q3B7S5 101 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 KRTAP27-1Q3LI81 207 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 Q499Y3 187 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 C1orf194Q5T5A4 169 aa2.22□□□□□ -2.05
VPS35-209ENST00000568642 HENMT1Q5T8I9 393 aaKnown RBP2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms