RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 EIF4EBP1Q13541 118 aaPredicted RBP15.51■□□□□ 0.07
CLN3-225ENST00000566824 DHRS11Q6UWP2 260 aa15.51■□□□□ 0.07
CLN3-225ENST00000566824 WFDC12Q8WWY7 111 aa15.51■□□□□ 0.07
CLN3-225ENST00000566824 ZNF2Q9BSG1 426 aaPredicted RBP15.51■□□□□ 0.07
CLN3-225ENST00000566824 TINAGL1Q9GZM7 467 aaPredicted RBP15.51■□□□□ 0.07
CLN3-225ENST00000566824 V9GYH0 126 aa15.51■□□□□ 0.07
CLN3-225ENST00000566824 FABP12A6NFH5 140 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 OR5H14A6NHG9 310 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 H7C2Y5 167 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 RBBP9O75884 186 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 CD3DP04234 171 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 C9orf152Q5JTZ5 239 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 CCDC190Q86UF4 302 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 FAM71E2Q8N5Q1 922 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 C3orf56Q8N813 242 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 OR4D10Q8NGI6 311 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 OR2T6Q8NHC8 308 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 SMIM4Q8WVI0 70 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 DDB2Q92466 427 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 AKR1E2Q96JD6 320 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 FXYD6Q9H0Q3 95 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 RBMX2Q9Y388 322 aaKnown RBP15.5■□□□□ 0.07
CLN3-225ENST00000566824 WASHC3Q9Y3C0 194 aa15.5■□□□□ 0.07
CLN3-225ENST00000566824 CTDSPLO15194 276 aa15.49■□□□□ 0.07
CLN3-225ENST00000566824 FGF16O43320 207 aa15.49■□□□□ 0.07
CLN3-225ENST00000566824 PEX14O75381 377 aa15.49■□□□□ 0.07
CLN3-225ENST00000566824 MMDQ15546 238 aa15.49■□□□□ 0.07
CLN3-225ENST00000566824 TMEM17Q86X19 198 aa15.49■□□□□ 0.07
CLN3-225ENST00000566824 BVESQ8NE79 360 aa15.49■□□□□ 0.07
CLN3-225ENST00000566824 OR6Q1Q8NGQ2 317 aa15.49■□□□□ 0.07
CLN3-225ENST00000566824 ZNF747Q9BV97 191 aa15.49■□□□□ 0.07
CLN3-225ENST00000566824 SLC5A7Q9GZV3 580 aa15.49■□□□□ 0.07
CLN3-225ENST00000566824 SLC35D1Q9NTN3 355 aa15.49■□□□□ 0.07
CLN3-225ENST00000566824 A0A1B0GUS0 222 aa15.48■□□□□ 0.07
CLN3-225ENST00000566824 M0QZK8 103 aa15.48■□□□□ 0.07
CLN3-225ENST00000566824 TNFSF12O43508 249 aa15.48■□□□□ 0.07
CLN3-225ENST00000566824 MC5RP33032 325 aa15.48■□□□□ 0.07
CLN3-225ENST00000566824 BRWD1-AS2P59051 145 aa15.48■□□□□ 0.07
CLN3-225ENST00000566824 ZNF79Q15937 498 aa15.48■□□□□ 0.07
CLN3-225ENST00000566824 KLHDC1Q8N7A1 406 aa15.48■□□□□ 0.07
CLN3-225ENST00000566824 C15orf40Q8WUR7 153 aa15.48■□□□□ 0.07
CLN3-225ENST00000566824 MOB3AQ96BX8 217 aa15.48■□□□□ 0.07
CLN3-225ENST00000566824 HSPB9Q9BQS6 159 aa15.48■□□□□ 0.07
CLN3-225ENST00000566824 GSTZ1O43708 216 aaPredicted RBP15.47■□□□□ 0.07
CLN3-225ENST00000566824 VSIG10L2P0DP72 767 aa15.47■□□□□ 0.07
CLN3-225ENST00000566824 THBS3P49746 956 aa15.47■□□□□ 0.07
CLN3-225ENST00000566824 OR2B11Q5JQS5 317 aa15.47■□□□□ 0.07
CLN3-225ENST00000566824 VAX1Q5SQQ9 334 aa15.47■□□□□ 0.07
CLN3-225ENST00000566824 FAAP20Q6NZ36 180 aa15.47■□□□□ 0.07
CLN3-225ENST00000566824 ZNF818PQ6ZRF7 136 aa15.47■□□□□ 0.07
CLN3-225ENST00000566824 TMEM229BQ8NBD8 167 aa15.47■□□□□ 0.07
CLN3-225ENST00000566824 NPBQ8NG41 125 aa15.47■□□□□ 0.07
CLN3-225ENST00000566824 TAS2R8Q9NYW2 309 aa15.47■□□□□ 0.07
CLN3-225ENST00000566824 NBR2O15453 112 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 APOA2P02652 100 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 CD74P04233 296 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 GNRHRP30968 328 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 S100A5P33763 92 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 VDAC2P45880 294 aaPredicted RBP15.46■□□□□ 0.07
CLN3-225ENST00000566824 HERV-K104P61576 105 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 MRPS10P82664 201 aaKnown RBP15.46■□□□□ 0.07
CLN3-225ENST00000566824 ARSJQ5FYB0 599 aaPredicted RBP15.46■□□□□ 0.07
CLN3-225ENST00000566824 C10orf99Q6UWK7 81 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 OR8H1Q8NGG4 311 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 OR6F1Q8NGZ6 308 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 WIPF2Q8TF74 440 aaPredicted RBP15.46■□□□□ 0.07
CLN3-225ENST00000566824 WNT10AQ9GZT5 417 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 FBXL15Q9H469 300 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 ZNF107Q9UII5 783 aaPredicted RBP15.46■□□□□ 0.07
CLN3-225ENST00000566824 LINC00527Q9UJ94 153 aa15.46■□□□□ 0.07
CLN3-225ENST00000566824 SRRM4A7MD48 611 aaKnown RBP15.45■□□□□ 0.06
CLN3-225ENST00000566824 NDUFA3O95167 84 aa15.45■□□□□ 0.06
CLN3-225ENST00000566824 IGLV2-23P01705 113 aa15.45■□□□□ 0.06
CLN3-225ENST00000566824 RPS16P62249 146 aaKnown RBP15.45■□□□□ 0.06
CLN3-225ENST00000566824 PSG5Q15238 335 aa15.45■□□□□ 0.06
CLN3-225ENST00000566824 C5orf64Q2M2E5 130 aa15.45■□□□□ 0.06
CLN3-225ENST00000566824 CNPY1Q3B7I2 92 aa15.45■□□□□ 0.06
CLN3-225ENST00000566824 AADACL3Q5VUY0 350 aa15.45■□□□□ 0.06
CLN3-225ENST00000566824 PDPNQ86YL7 162 aa15.45■□□□□ 0.06
CLN3-225ENST00000566824 MFSD4AQ8N468 514 aa15.45■□□□□ 0.06
CLN3-225ENST00000566824 NOL4LQ96MY1 436 aaPredicted RBP15.45■□□□□ 0.06
CLN3-225ENST00000566824 RASL11BQ9BPW5 248 aa15.45■□□□□ 0.06
CLN3-225ENST00000566824 TPSG1Q9NRR2 321 aa15.45■□□□□ 0.06
CLN3-225ENST00000566824 LIN7CQ9NUP9 197 aaKnown RBP15.45■□□□□ 0.06
CLN3-225ENST00000566824 FCN1O00602 326 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 SLC22A5O76082 557 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 IGHG2P01859 326 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 ZNF735P0CB33 412 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 TSPAN5P62079 268 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 ACTBL2Q562R1 376 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 PYDC2Q56P42 97 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 RNASE10Q5GAN6 216 aaKnown RBP15.44■□□□□ 0.06
CLN3-225ENST00000566824 STEAP1BQ6NZ63 245 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 KCTD9Q7L273 389 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 C11orf44Q8N8P7 122 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 TCTEX1D2Q8WW35 142 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 FLYWCH2Q96CP2 140 aaKnown RBP15.44■□□□□ 0.06
CLN3-225ENST00000566824 ADTRPQ96IZ2 230 aa15.44■□□□□ 0.06
CLN3-225ENST00000566824 RABL2AQ9UBK7 228 aaPredicted RBP15.44■□□□□ 0.06
CLN3-225ENST00000566824 RABL2BQ9UNT1 228 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms