RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 OR3A1P47881 315 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 FAM3BP58499 235 aaPredicted RBP11.11□□□□□ -0.63
CLN3-210ENST00000563874 LPAL2Q16609 132 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 DEFB123Q8N688 67 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 OR52L2PQ8NGH6 319 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 RAB24Q969Q5 203 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 MISP3Q96FF7 219 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 C5orf30Q96GV9 206 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 WDYHV1Q96HA8 205 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 TTTY12Q9BZ98 90 aa11.11□□□□□ -0.63
CLN3-210ENST00000563874 PIGBOS1A0A0B4J2F0 54 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 ODAMA1E959 279 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 IGHEP01854 428 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 CRYAAP02489 173 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 GNB2P62879 340 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 USF2Q15853 346 aaPredicted RBP11.1□□□□□ -0.63
CLN3-210ENST00000563874 C6orf15Q6UXA7 325 aaPredicted RBP11.1□□□□□ -0.63
CLN3-210ENST00000563874 OR5R1Q8NH85 324 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 PKIBQ9C010 78 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 OR2J1Q9GZK6 312 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 MED13Q9UHV7 2174 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 NCOR1O75376 2440 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 CTXND1A0A1B0GTU2 59 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 PSPNO60542 156 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 IL18BPO95998 194 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 PDGFBP01127 241 aaPredicted RBP11.1□□□□□ -0.63
CLN3-210ENST00000563874 GYPAP02724 150 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 PLGLB1Q02325 96 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 NEU1Q99519 415 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 PYGO2Q9BRQ0 406 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 AGMATQ9BSE5 352 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 PARD6GQ9BYG4 376 aaPredicted RBP11.1□□□□□ -0.63
CLN3-210ENST00000563874 B4GALT7Q9UBV7 327 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 LOXL2Q9Y4K0 774 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 C17orf98A8MV24 154 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 UBE2G2P60604 165 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 PMS2P11Q13670 270 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 ACSF3Q4G176 576 aaPredicted RBP11.1□□□□□ -0.63
CLN3-210ENST00000563874 GCSAMLQ5JQS6 135 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 ABHD17BQ5VST6 288 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 TMEM251Q8N6I4 163 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 HSPB7Q9UBY9 170 aa11.1□□□□□ -0.63
CLN3-210ENST00000563874 DVL1O14640 695 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 HRASP01112 189 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 DUSP3P51452 185 aaPredicted RBP11.09□□□□□ -0.63
CLN3-210ENST00000563874 OR1C1Q15619 314 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 ETFRF1Q6IPR1 90 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 MOB1BQ7L9L4 216 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 TPRX1Q8N7U7 411 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 RTL8AQ9BWD3 113 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 STRADBQ9C0K7 418 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 WASF3Q9UPY6 502 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 LRRC30A6NM36 301 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 TMEM250H0YL14 139 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 WNT9BO14905 357 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 NPPCP23582 126 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 AESQ08117 197 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 ZNF826PQ6ZT77 177 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 OR10P1Q8NGE3 313 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 TMEM147Q9BVK8 224 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 NPCDR1Q9BY65 106 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 LOC400499M0QZD8 3231 aa11.09□□□□□ -0.63
CLN3-210ENST00000563874 IGHV3-43A0A0B4J1X8 118 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 PGPEP1LA6NFU8 196 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 WNT2P09544 360 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 IGHV3-43DP0DP04 118 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 DNLZQ5SXM8 178 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 OR2T10Q8NGZ9 312 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 PLPPR2Q96GM1 343 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 A0A1B0GUS0 222 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 A8MWP6 167 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 DEFB108AA8MXU0 73 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 C12orf77C9JDV5 145 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 SH2D1BO14796 132 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 BRWD1-AS2P59051 145 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 TMPRSS7Q7RTY8 843 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 DERL1Q9BUN8 251 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 ACTR3CQ9C0K3 210 aaPredicted RBP11.08□□□□□ -0.64
CLN3-210ENST00000563874 MBNL3Q9NUK0 354 aaKnown RBP11.08□□□□□ -0.64
CLN3-210ENST00000563874 TIMM9Q9Y5J7 89 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 ZFHX4Q86UP3 3567 aa11.08□□□□□ -0.64
CLN3-210ENST00000563874 TRAV38-1A0A0B4J264 116 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 C11orf94C9JXX5 98 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 FAM90A26D6RGX4 464 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 COX5AP20674 150 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 MSMO1Q15800 293 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 MRPL41Q8IXM3 137 aaKnown RBP11.07□□□□□ -0.64
CLN3-210ENST00000563874 ZNF645Q8N7E2 425 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 ZNF709Q8N972 641 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 RFESDQ8TAC1 157 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.07□□□□□ -0.64
CLN3-210ENST00000563874 PMS2P5A8MQ11 134 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 RNF212BA8MTL3 300 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 CD46P15529 392 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 MPLP40238 635 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 ERVK11-1P61568 191 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 FAM78BQ5VT40 261 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 CST9LP1Q5W188 147 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 TGIF2LYQ8IUE0 185 aa11.07□□□□□ -0.64
CLN3-210ENST00000563874 RNASEH2CQ8TDP1 164 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms