RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TNFSF12O43508 249 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 OR2F2O95006 317 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 S100A9P06702 114 aaKnown RBP9.2□□□□□ -0.94
USP3-218ENST00000560202 PVALBP20472 110 aaPredicted RBP9.2□□□□□ -0.94
USP3-218ENST00000560202 PAX6P26367 422 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 CD34P28906 385 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 RAB7AP51149 207 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 OR2F1Q13607 317 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 MSMO1Q15800 293 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 GUCA2BQ16661 112 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 LRRC75A-AS1Q8N1F1 130 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 ZBTB34Q8NCN2 500 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 GALNT14Q96FL9 552 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 GPHA2Q96T91 129 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 ZNF251Q9BRH9 671 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 ABHD14AQ9BUJ0 271 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 SUCNR1Q9BXA5 334 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 MFFQ9GZY8 342 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 IFI27L2Q9H2X8 130 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 ONECUT1Q9UBC0 465 aa9.2□□□□□ -0.94
USP3-218ENST00000560202 DOPEY2Q9Y3R5 2298 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 A0A087X0M5 115 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 A0A0B4J2A0 478 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 C3orf85A0A1B0GTC6 90 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 A0A1B0GX30 115 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 hCG_1809904A0A1W2PP81 198 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 A0A1W2PPE2 198 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 A0A1W2PR64 198 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 A0A1W2PRV1 198 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 NUPL2O15504 423 aaKnown RBP9.19□□□□□ -0.94
USP3-218ENST00000560202 RBP4P02753 201 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 OR5AC1P0C628 307 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 FOLR2P14207 255 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 RPL35P42766 123 aaKnown RBP9.19□□□□□ -0.94
USP3-218ENST00000560202 GPR12P47775 334 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 GNG10P50151 68 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 LCN2P80188 198 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 SRSF4Q08170 494 aaKnown RBP9.19□□□□□ -0.94
USP3-218ENST00000560202 ANKRD55Q3KP44 614 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 SP6Q3SY56 376 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 Q3ZCU0 254 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 C10orf91Q5T1B1 145 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 SLC25A48Q6ZT89 311 aaKnown RBP9.19□□□□□ -0.94
USP3-218ENST00000560202 KCTD9Q7L273 389 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 MBD6Q96DN6 1003 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 C5orf30Q96GV9 206 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 PRR13Q9NZ81 148 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 SHPKQ9UHJ6 478 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 CARHSP1Q9Y2V2 147 aaKnown RBP9.19□□□□□ -0.94
USP3-218ENST00000560202 DSCAML1Q8TD84 2053 aa9.19□□□□□ -0.94
USP3-218ENST00000560202 SPG11Q96JI7 2443 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 FAM74A7A6NL05 159 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 ENSAO43768 121 aaKnown RBP9.18□□□□□ -0.94
USP3-218ENST00000560202 FOXH1O75593 365 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 SLC25A16P16260 332 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 F2RP25116 425 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 ARF6P62330 175 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 TMEM187Q14656 261 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 C2orf68Q2NKX9 166 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 FAM74A3Q4VXF1 159 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 ATRAIDQ6UW56 229 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 GLYATL2Q8WU03 294 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 ST8SIA2Q92186 375 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 TP53RKQ96S44 253 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 TSNAXQ99598 290 aaKnown RBP9.18□□□□□ -0.94
USP3-218ENST00000560202 TMEM133Q9H2Q1 129 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 GAB2Q9UQC2 676 aa9.18□□□□□ -0.94
USP3-218ENST00000560202 MALRD1Q5VYJ5 2156 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 FXYD6-FXYD2A0A087WZ82 144 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 KANTRA0A1W2PQU2 76 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 TMEM218A2RU14 115 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 FAM157AC9JC47 383 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 M0R1W7 72 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 GOSR2O14653 212 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 PROP1O75360 226 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 SLC25A4P12235 298 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 SSTP61278 116 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 PAX2Q02962 417 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 EIF4EBP1Q13541 118 aaPredicted RBP9.17□□□□□ -0.94
USP3-218ENST00000560202 BTNL3Q6UXE8 466 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 LYG1Q8N1E2 194 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 ABHD12Q8N2K0 398 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 KCNRGQ8N5I3 272 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 Q8N7P7 452 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 C8orf31Q8N9H6 132 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 BPIFCQ8NFQ6 507 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 OR51H1Q8NH63 302 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 OR9G1Q8NH87 305 aa9.17□□□□□ -0.94
USP3-218ENST00000560202 IGHV2-70DA0A0C4DH43 119 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 DBX1A6NMT0 343 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 RNF212BA8MTL3 300 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 H0Y980 276 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 J3QR06 171 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 RAB29O14966 203 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 S100PP25815 95 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 RPL39P5Q59GN2 51 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 ZNF66Q6ZN08 573 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 ZNF600Q6ZNG1 722 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 LIAT1Q6ZQX7 453 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 ODF3L1Q8IXM7 274 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms