RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 MOB4Q9Y3A3 225 aa7.47□□□□□ -1.21
LDLR-211ENST00000560173 TRBV6-7A0A0A0MS04 114 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 ZNF736B4DX44 427 aaPredicted RBP7.46□□□□□ -1.22
LDLR-211ENST00000560173 INMT-MINDY4F8WBC2 141 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 M0QZK8 103 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 AMY1AP04745 511 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 AMY2AP04746 511 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 GSTT2P0CG29 244 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 AKAIN1P0CW23 69 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 TMEM11P17152 192 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 CD1BP29016 333 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 CEACAM6P40199 344 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 GNG2P59768 71 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 SRSF4Q08170 494 aaKnown RBP7.46□□□□□ -1.22
LDLR-211ENST00000560173 HES1Q14469 280 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 MEF2DQ14814 521 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 ACTBL2Q562R1 376 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 IGSF11Q5DX21 431 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 FAM71F2Q6NXP2 309 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 Q6ZS46 218 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 Q8N6K4 173 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 TMEM229BQ8NBD8 167 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 GPX8Q8TED1 209 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 EDARADDQ8WWZ3 215 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 EAF1Q96JC9 268 aaPredicted RBP7.46□□□□□ -1.22
LDLR-211ENST00000560173 CITED1Q99966 193 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 ZNF251Q9BRH9 671 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 AGMATQ9BSE5 352 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 TOLLIPQ9H0E2 274 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 SERTAD4Q9NUC0 356 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 RDH8Q9NYR8 311 aa7.46□□□□□ -1.22
LDLR-211ENST00000560173 HMX3A6NHT5 357 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 SH2D7A6NKC9 451 aaPredicted RBP7.45□□□□□ -1.22
LDLR-211ENST00000560173 RAB29O14966 203 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 BET1O15155 118 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 TCRBP04435 133 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 SPNP16150 400 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 HNF4GQ14541 408 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 TMEM95Q3KNT9 176 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 RPL39P5Q59GN2 51 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 KLHDC1Q8N7A1 406 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 OR2T10Q8NGZ9 312 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 ABHD14BQ96IU4 210 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 NABP2Q9BQ15 211 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 NEURL2Q9BR09 285 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 ST6GALNAC5Q9BVH7 336 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 GHITMQ9H3K2 345 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 HRASLSQ9HDD0 168 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 IFT46Q9NQC8 304 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 PIPOXQ9P0Z9 390 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 SCP2D1Q9UJQ7 156 aa7.45□□□□□ -1.22
LDLR-211ENST00000560173 DISC1C4P0D8 188 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 FGF16O43320 207 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 MOSP00540 346 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 H2AFB2P0C5Z0 115 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 VDAC2P45880 294 aaPredicted RBP7.44□□□□□ -1.22
LDLR-211ENST00000560173 RBMS2Q15434 407 aaKnown RBP7.44□□□□□ -1.22
LDLR-211ENST00000560173 TATDN3Q17R31 274 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 ABCA11PQ4W5N1 156 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 RNASE12Q5GAN4 147 aaKnown RBP7.44□□□□□ -1.22
LDLR-211ENST00000560173 H1FOOQ8IZA3 346 aaPredicted RBP7.44□□□□□ -1.22
LDLR-211ENST00000560173 C5orf56Q8N8D9 126 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 OR10J5Q8NHC4 309 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 WIPF2Q8TF74 440 aaPredicted RBP7.44□□□□□ -1.22
LDLR-211ENST00000560173 RBMXL1Q96E39 390 aaKnown RBP7.44□□□□□ -1.22
LDLR-211ENST00000560173 S1PR3Q99500 378 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 PRRT1Q99946 306 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 SLC25A21Q9BQT8 299 aaPredicted RBP7.44□□□□□ -1.22
LDLR-211ENST00000560173 WNT10AQ9GZT5 417 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 GPN1Q9HCN4 374 aaPredicted RBP7.44□□□□□ -1.22
LDLR-211ENST00000560173 NUDT15Q9NV35 164 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 MCUBQ9NWR8 336 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 KLK11Q9UBX7 282 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 RNF150Q9ULK6 438 aa7.44□□□□□ -1.22
LDLR-211ENST00000560173 CMYA5Q8N3K9 4069 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 PROP1O75360 226 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 PEX14O75381 377 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 CCNKO75909 580 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 CT45A6P0DMU7 189 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 CT45A5P0DMU8 189 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 CT45A7P0DMV0 189 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 VSIG10L2P0DP72 767 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 PTHLHP12272 177 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 GPR12P47775 334 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 PDLIM3Q53GG5 364 aaPredicted RBP7.43□□□□□ -1.22
LDLR-211ENST00000560173 ARSJQ5FYB0 599 aaPredicted RBP7.43□□□□□ -1.22
LDLR-211ENST00000560173 STEAP1BQ6NZ63 245 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 HOGA1Q86XE5 327 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.43□□□□□ -1.22
LDLR-211ENST00000560173 OR8H1Q8NGG4 311 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 SGMS2Q8NHU3 365 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 SCGB3A2Q96PL1 93 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 GINS4Q9BRT9 223 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 PLSCR3Q9NRY6 295 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 ANXA10Q9UJ72 324 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 ZNF221Q9UK13 617 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 NOTCH1P46531 2555 aa7.43□□□□□ -1.22
LDLR-211ENST00000560173 C7orf66A4D0T2 115 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 OR5H14A6NHG9 310 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 NCBP2LA6PVI3 153 aaKnown RBP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms