RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SLC25A33Q9BSK2 321 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 CCDC32Q9BV29 185 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 TINAGL1Q9GZM7 467 aaPredicted RBP8.09□□□□□ -1.11
USP3-216ENST00000559873 SCP2D1Q9UJQ7 156 aa8.09□□□□□ -1.11
USP3-216ENST00000559873 IGHV3-72A0A0B4J1Y9 119 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 IGKV1D-13A0A0B4J2D9 117 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 FAM181BA6NEQ2 426 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 CENPXA8MT69 81 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 H0YJW9 148 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 GPR31O00270 319 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 FGF16O43320 207 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 CT45A6P0DMU7 189 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 CT45A5P0DMU8 189 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 CT45A7P0DMV0 189 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 IGKV1-13P0DP09 117 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 DUTP33316 252 aaKnown RBP8.08□□□□□ -1.12
USP3-216ENST00000559873 KIR2DS2P43631 304 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 EBI3Q14213 229 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 SURF2Q15527 256 aaPredicted RBP8.08□□□□□ -1.12
USP3-216ENST00000559873 SCGB2B2Q4G0G5 96 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 ABCA11PQ4W5N1 156 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 ZNF660Q6AZW8 331 aaPredicted RBP8.08□□□□□ -1.12
USP3-216ENST00000559873 TMEM219Q86XT9 240 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 POC5Q8NA72 575 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 OR5AN1Q8NGI8 311 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 OR4C16Q8NGL9 310 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 PIFOQ8TCI5 191 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 TCTEX1D2Q8WW35 142 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 ZNF486Q96H40 463 aaPredicted RBP8.08□□□□□ -1.12
USP3-216ENST00000559873 EAF1Q96JC9 268 aaPredicted RBP8.08□□□□□ -1.12
USP3-216ENST00000559873 RBM14Q96PK6 669 aaKnown RBP8.08□□□□□ -1.12
USP3-216ENST00000559873 SCGB3A2Q96PL1 93 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 FXYD6Q9H0Q3 95 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 AKIP1Q9NQ31 210 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 SLC35D1Q9NTN3 355 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 LIN7CQ9NUP9 197 aaKnown RBP8.08□□□□□ -1.12
USP3-216ENST00000559873 MCUBQ9NWR8 336 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 KIAA1456Q9P272 454 aa8.08□□□□□ -1.12
USP3-216ENST00000559873 A0A1B0GUS0 222 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 NAP1L6A6NFF2 107 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 SPDEFO95238 335 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 PGAM2P15259 253 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 CD24P25063 80 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 CD40LGP29965 261 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 PPP5CP53041 499 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 UCP3P55916 312 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 KLF9Q13886 244 aaPredicted RBP8.07□□□□□ -1.12
USP3-216ENST00000559873 ZNF846Q147U1 533 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 MMDQ15546 238 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 ARSJQ5FYB0 599 aaPredicted RBP8.07□□□□□ -1.12
USP3-216ENST00000559873 AADACL3Q5VUY0 350 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 GLDNQ6ZMI3 551 aaPredicted RBP8.07□□□□□ -1.12
USP3-216ENST00000559873 ZNF818PQ6ZRF7 136 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 MFSD4AQ8N468 514 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 CCDC71LQ8N9Z2 235 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 ZNF383Q8NA42 475 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 DRAXINQ8NBI3 349 aaPredicted RBP8.07□□□□□ -1.12
USP3-216ENST00000559873 BVESQ8NE79 360 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 OR4F5Q8NH21 305 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 OR4S2Q8NH73 311 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 TERB2Q8NHR7 220 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 ZFAND1Q8TCF1 268 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 FLYWCH2Q96CP2 140 aaKnown RBP8.07□□□□□ -1.12
USP3-216ENST00000559873 TSNAXQ99598 290 aaKnown RBP8.07□□□□□ -1.12
USP3-216ENST00000559873 RNF5Q99942 180 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 C7orf50Q9BRJ6 194 aaKnown RBP8.07□□□□□ -1.12
USP3-216ENST00000559873 CCL28Q9NRJ3 127 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 SLC2A8Q9NY64 477 aa8.07□□□□□ -1.12
USP3-216ENST00000559873 NCBP2LA6PVI3 153 aaKnown RBP8.06□□□□□ -1.12
USP3-216ENST00000559873 NBR2O15453 112 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 CHST1O43916 411 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 NDUFA7O95182 113 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 IL7P13232 177 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 RAG2P55895 527 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 FOXL1Q12952 345 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 HNF4GQ14541 408 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 KRTAP21-3Q3LHN1 58 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 C11orf88Q6PI97 169 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 IDO2Q6ZQW0 420 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 LHFPL1Q86WI0 220 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 Q8N6K4 173 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 TCTEX1D1Q8N7M0 179 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.06□□□□□ -1.12
USP3-216ENST00000559873 OR4D10Q8NGI6 311 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 OR51S1Q8NGJ8 323 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 OR2T6Q8NHC8 308 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 OSR1Q8TAX0 266 aaPredicted RBP8.06□□□□□ -1.12
USP3-216ENST00000559873 CD300LFQ8TDQ1 290 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 HARBI1Q96MB7 349 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 RASL11BQ9BPW5 248 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 RSRP1Q9BUV0 290 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 PRSS22Q9GZN4 317 aa8.06□□□□□ -1.12
USP3-216ENST00000559873 C14orf166Q9Y224 244 aaKnown RBP8.06□□□□□ -1.12
USP3-216ENST00000559873 CUBNO60494 3623 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 SHOXO15266 292 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 TNFSF12O43508 249 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 CREBL2O60519 120 aaPredicted RBP8.05□□□□□ -1.12
USP3-216ENST00000559873 FCGR3BO75015 233 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 PROP1O75360 226 aa8.05□□□□□ -1.12
USP3-216ENST00000559873 IGLV2-14P01704 120 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms