RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CLVS2Q5SYC1 327 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 C8orf74Q6P047 294 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 TNFAIP8L2Q6P589 184 aaPredicted RBP0.76□□□□□ -2.29
USP3-209ENST00000558925 ZNF322Q6U7Q0 402 aaPredicted RBP0.76□□□□□ -2.29
USP3-209ENST00000558925 SBSNQ6UWP8 590 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 LRRN1Q6UXK5 716 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 C2orf91Q6ZV80 131 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 GID4Q8IVV7 300 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 C10orf67Q8IYJ2 551 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 ZNF565Q8N9K5 539 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 GPR32P1Q8NGA4 272 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 OR51D1Q8NGF3 324 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 OR8J2Q8NGG1 315 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 OR10A6Q8NH74 314 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 CMTM2Q8TAZ6 248 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 PIGXQ8TBF5 258 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 RPS4Y2Q8TD47 263 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 RNF133Q8WVZ7 376 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 SFRP2Q96HF1 295 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 CAPZA3Q96KX2 299 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 C20orf166-AS1Q96NR2 134 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 MGLLQ99685 303 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 SPZ1Q9BXG8 430 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 OR51I1Q9H343 314 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 SMDT1Q9H4I9 107 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 CXorf21Q9HAI6 301 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 HRASLSQ9HDD0 168 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 XPNPEP1Q9NQW7 623 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 BABAM2Q9NXR7 383 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 HHLA2Q9UM44 414 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 SNX12Q9UMY4 172 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 POLR1DQ9Y2S0 133 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 COQ4Q9Y3A0 265 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 FIS1Q9Y3D6 152 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 ICE1Q9Y2F5 2266 aa0.76□□□□□ -2.29
USP3-209ENST00000558925 MYO16Q9Y6X6 1858 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 ABCC11Q96J66 1382 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 PTPRJQ12913 1337 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 MYO3BQ8WXR4 1341 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.75□□□□□ -2.29
USP3-209ENST00000558925 A0A0J9YX75 114 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 C5orf49A4QMS7 147 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 OR6C6A6NF89 314 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 OR5K4A6NMS3 321 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 OR11H12B2RN74 326 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 KCNK1O00180 336 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 COX7A2LO14548 114 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 PSCAO43653 123 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 ZNF189O75820 626 aaPredicted RBP0.75□□□□□ -2.29
USP3-209ENST00000558925 IFNA5P01569 189 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 APOEP02649 317 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 ISG15P05161 165 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 CALB1P05937 261 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 KRT7P08729 469 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 CD7P09564 240 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 CBR1P16152 277 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 NPPCP23582 126 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 CRHBPP24387 322 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 CD200P41217 278 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 LPAR6P43657 344 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 NKX2-5P52952 324 aaPredicted RBP0.75□□□□□ -2.29
USP3-209ENST00000558925 RWDD2BP57060 319 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 MEF2BQ02080 365 aaPredicted RBP0.75□□□□□ -2.29
USP3-209ENST00000558925 NUMA1Q14980 2115 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 LGALS9BQ3B8N2 356 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 KRTAP6-3Q3LI67 103 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 N4BP2L1Q5TBK1 243 aaPredicted RBP0.75□□□□□ -2.29
USP3-209ENST00000558925 LGALS9CQ6DKI2 356 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 SFXN4Q6P4A7 337 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 CD200R1LQ6Q8B3 271 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 SMARCD3Q6STE5 483 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 AMTNQ6UX39 209 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 HIST2H3AQ71DI3 136 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 ZNF550Q7Z398 422 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 GPHB5Q86YW7 130 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 UMODL1-AS1Q8N2C9 162 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 CNEP1R1Q8N9A8 125 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 MNS1Q8NEH6 495 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 OR2T27Q8NH04 317 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 OR11H2Q8NH07 326 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 FNDC9Q8TBE3 224 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 GPR119Q8TDV5 335 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 C16orf78Q8WTQ4 265 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 RAB2BQ8WUD1 216 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 ASB17Q8WXJ9 295 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 KLK6Q92876 244 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 FGF13Q92913 245 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 ANKRD36BP1Q96IX9 119 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 NMNAT3Q96T66 252 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 TTTY13Q9BZ97 58 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 HES4Q9HCC6 221 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 C3orf18Q9UK00 162 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 ANAPC10Q9UM13 185 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 GUCA1BQ9UMX6 200 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 CCL26Q9Y258 94 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 MMACHCQ9Y4U1 282 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 PXMP4Q9Y6I8 212 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 NCKAP5O14513 1909 aa0.75□□□□□ -2.29
USP3-209ENST00000558925 NYNRINQ9P2P1 1898 aaKnown RBP0.75□□□□□ -2.29
USP3-209ENST00000558925 FCGBPQ9Y6R7 5405 aaPredicted RBP0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms