RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 HES3Q5TGS1 186 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 ZNF826PQ6ZT77 177 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 FADS6Q8N9I5 356 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 DTD1Q8TEA8 209 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 WNT10AQ9GZT5 417 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 HEYLQ9NQ87 328 aaPredicted RBP9.59□□□□□ -0.87
LDLR-208ENST00000558518 MUC3AQ02505 3323 aa9.59□□□□□ -0.87
LDLR-208ENST00000558518 GJE1A6NN92 205 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 SERF1AO75920 110 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 TDGF1P3P51864 188 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 SERF2P84101 59 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 AESQ08117 197 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 FXYD3Q14802 87 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 GBGT1Q8N5D6 347 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 C11orf42Q8N5U0 333 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 LIN7CQ9NUP9 197 aaKnown RBP9.58□□□□□ -0.88
LDLR-208ENST00000558518 SELENOKQ9Y6D0 94 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 ZNF503-AS2A6NEH8 195 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 OR10J1P30954 320 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 PCOLCEQ15113 449 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 OR5A2Q8NGI9 324 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 PLSCR2Q9NRY7 297 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 SIAH2O43255 324 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 MGST1P10620 155 aaKnown RBP9.58□□□□□ -0.88
LDLR-208ENST00000558518 TRA2AQ13595 282 aaKnown RBP eCLIP9.58□□□□□ -0.88
LDLR-208ENST00000558518 DAZAP2Q15038 168 aaPredicted RBP9.58□□□□□ -0.88
LDLR-208ENST00000558518 ZNF324BQ6AW86 544 aaPredicted RBP9.58□□□□□ -0.88
LDLR-208ENST00000558518 ETFRF1Q6IPR1 90 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 MBD3L1Q8WWY6 194 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 P2RX4Q99571 388 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 MED13Q9UHV7 2174 aa9.58□□□□□ -0.88
LDLR-208ENST00000558518 SCO2A0A1W2PP80 73 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 NPPCP23582 126 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 MMDQ15546 238 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 MRPL54Q6P161 138 aaKnown RBP9.57□□□□□ -0.88
LDLR-208ENST00000558518 CADM4Q8NFZ8 388 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 ACY3Q96HD9 319 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 KCNIP1Q9NZI2 227 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 ATG2AQ2TAZ0 1938 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 ODAMA1E959 279 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 SNURFLB1AK76 121 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 GNB1P62873 340 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 ZNF585BQ52M93 769 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 MIC13Q5XKP0 118 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 FAM19A2Q8N3H0 131 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 PSG11Q9UQ72 335 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 LOC400499M0QZD8 3231 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 C17orf98A8MV24 154 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 H0Y8G0 127 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 WNT9BO14905 357 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 AMTP48728 403 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 RPL30P62888 115 aaKnown RBP9.57□□□□□ -0.88
LDLR-208ENST00000558518 PLGLB1Q02325 96 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 CEACAM21Q3KPI0 293 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 C17orf82Q86X59 251 aaPredicted RBP9.57□□□□□ -0.88
LDLR-208ENST00000558518 NHLRC2Q8NBF2 726 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 DCTN5Q9BTE1 182 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 OBP2BQ9NPH6 170 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 TMEM242Q9NWH2 141 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 FOXJ2Q9P0K8 574 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 ZFHX4Q86UP3 3567 aa9.57□□□□□ -0.88
LDLR-208ENST00000558518 RBFOX2O43251 390 aaKnown RBP eCLIP9.56□□□□□ -0.88
LDLR-208ENST00000558518 SYNGR4O95473 234 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 OR2H2O95918 312 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 IGHEP01854 428 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 ARL14EPLP0DKL9 152 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 CCKARP32238 428 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 MSMO1Q15800 293 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 LBHQ53QV2 105 aaPredicted RBP9.56□□□□□ -0.88
LDLR-208ENST00000558518 WDR74Q6RFH5 385 aaPredicted RBP9.56□□□□□ -0.88
LDLR-208ENST00000558518 SIGLECL1Q8N7X8 197 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 TMEM147Q9BVK8 224 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 NPCDR1Q9BY65 106 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 NAT8BQ9UHF3 227 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 RNF24Q9Y225 148 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 BOD1L1Q8NFC6 3051 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 LRP5LA4QPB2 252 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 ALKBH6Q3KRA9 238 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 ACTL10Q5JWF8 245 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 TMEM42Q69YG0 159 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 OPN3Q9H1Y3 402 aaPredicted RBP9.56□□□□□ -0.88
LDLR-208ENST00000558518 PROK2Q9HC23 129 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 TRAV1-1A0A0B4J248 108 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 FOLR3P41439 243 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 HINT1P49773 126 aaPredicted RBP9.56□□□□□ -0.88
LDLR-208ENST00000558518 TPPP2P59282 170 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 OR8I2Q8N0Y5 310 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 CISD2Q8N5K1 135 aaKnown RBP9.56□□□□□ -0.88
LDLR-208ENST00000558518 OR1L6Q8NGR2 347 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 ZCCHC14Q8WYQ9 949 aaKnown RBP9.56□□□□□ -0.88
LDLR-208ENST00000558518 ANAPC16Q96DE5 110 aa9.56□□□□□ -0.88
LDLR-208ENST00000558518 CIB3Q96Q77 187 aaPredicted RBP9.56□□□□□ -0.88
LDLR-208ENST00000558518 PINLYPA6NC86 204 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 ZNF716A6NP11 495 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 FCGR3BO75015 233 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 PRB4P10163 310 aaPredicted RBP9.55□□□□□ -0.88
LDLR-208ENST00000558518 LINC01551Q86U37 167 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 OR5AU1Q8NGC0 362 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 OR10G8Q8NGN5 311 aa9.55□□□□□ -0.88
LDLR-208ENST00000558518 MRPL18Q9H0U6 180 aaKnown RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms