RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 SRMP19623 302 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 FUT3P21217 361 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 NFYBP25208 207 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 GPX4P36969 197 aaPredicted RBP7.04□□□□□ -1.28
USP3-208ENST00000558285 GLIPR1P48060 266 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 RPS11P62280 158 aaKnown RBP eCLIP7.04□□□□□ -1.28
USP3-208ENST00000558285 SUMO1P63165 101 aaKnown RBP7.04□□□□□ -1.28
USP3-208ENST00000558285 FABP5Q01469 135 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 MADCAM1Q13477 382 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 PIGYQ3MUY2 71 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 ALKAL2Q6UX46 152 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 GLDNQ6ZMI3 551 aaPredicted RBP7.04□□□□□ -1.28
USP3-208ENST00000558285 Q6ZTK2 550 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 SSX9Q7RTT3 188 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 TPRX1Q8N7U7 411 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 OR52M1Q8NGK5 317 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 OR10K1Q8NGX5 313 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 OR10X1Q8NGY0 326 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 THAP6Q8TBB0 222 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 EDARADDQ8WWZ3 215 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 RPEQ96AT9 228 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 AJUBAQ96IF1 538 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 C1orf147Q96MC9 270 aaPredicted RBP7.04□□□□□ -1.28
USP3-208ENST00000558285 SEC11CQ9BY50 192 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 SELENOIQ9C0D9 397 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 PRSS22Q9GZN4 317 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 ARL6Q9H0F7 186 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 RIMS4Q9H426 269 aaPredicted RBP7.04□□□□□ -1.28
USP3-208ENST00000558285 C16orf95Q9H693 158 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 CALYQ9NYX4 217 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 IDI2-AS1Q9NZ38 188 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 C1RLQ9NZP8 487 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 ABRACLQ9P1F3 81 aa7.04□□□□□ -1.28
USP3-208ENST00000558285 SIRT4Q9Y6E7 314 aaPredicted RBP7.04□□□□□ -1.28
USP3-208ENST00000558285 A0A087X0M5 115 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 TRAV24A0A0B4J272 114 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 A0A1B0GX30 115 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 A0A1W2PPK0 400 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 C9orf170A2RU37 121 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 GEMIN2O14893 280 aaKnown RBP7.03□□□□□ -1.28
USP3-208ENST00000558285 TXNL1O43396 289 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 HTR2CP28335 458 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 RAB7AP51149 207 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 RAB2AP61019 212 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 MRPS10P82664 201 aaKnown RBP7.03□□□□□ -1.28
USP3-208ENST00000558285 KLF9Q13886 244 aaPredicted RBP7.03□□□□□ -1.28
USP3-208ENST00000558285 ZNF345Q14585 488 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 TAF9Q16594 264 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 TMEM95Q3KNT9 176 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 OR2B11Q5JQS5 317 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 NKAPLQ5M9Q1 402 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 PRAMEF5Q5TYX0 476 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 RAB12Q6IQ22 244 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 SLC16A13Q7RTY0 426 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 PUSL1Q8N0Z8 303 aaKnown RBP7.03□□□□□ -1.28
USP3-208ENST00000558285 BEST4Q8NFU0 473 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 OR13C5Q8NGS8 318 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 C15orf40Q8WUR7 153 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 PFDN5Q99471 154 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 CMSS1Q9BQ75 279 aaKnown RBP7.03□□□□□ -1.28
USP3-208ENST00000558285 TMEM59Q9BXS4 323 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 FBLN5Q9UBX5 448 aa7.03□□□□□ -1.28
USP3-208ENST00000558285 TRAV8-7A0A075B6U6 113 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 UBE2QL1A1L167 161 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 PDCD6O75340 191 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 UCHL1P09936 223 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 MDKP21741 143 aaPredicted RBP7.02□□□□□ -1.29
USP3-208ENST00000558285 KIR2DS4P43632 304 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 RAB5CP51148 216 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 ARL6IP1Q15041 203 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 PEA15Q15121 130 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 RAB11BQ15907 218 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 HCP5Q6MZN7 132 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 UNQ9370/PRO34162Q6UXP9 181 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 MOB1BQ7L9L4 216 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 OR2W3Q7Z3T1 314 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 C11orf42Q8N5U0 333 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 SMIM4Q8WVI0 70 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 TOMM40LQ969M1 308 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 COQ2Q96H96 371 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 SMCO4Q9NRQ5 59 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 GNG12Q9UBI6 72 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 TCF19Q9Y242 345 aa7.02□□□□□ -1.29
USP3-208ENST00000558285 MEX3AA1L020 520 aaKnown RBP7.01□□□□□ -1.29
USP3-208ENST00000558285 SDCBPO00560 298 aaPredicted RBP7.01□□□□□ -1.29
USP3-208ENST00000558285 LANCL1O43813 399 aa7.01□□□□□ -1.29
USP3-208ENST00000558285 MPIG6BO95866 241 aa7.01□□□□□ -1.29
USP3-208ENST00000558285 OMGP23515 440 aa7.01□□□□□ -1.29
USP3-208ENST00000558285 SNRPEP62304 92 aaKnown RBP7.01□□□□□ -1.29
USP3-208ENST00000558285 HABP2Q14520 560 aaPredicted RBP7.01□□□□□ -1.29
USP3-208ENST00000558285 LY6EQ16553 131 aa7.01□□□□□ -1.29
USP3-208ENST00000558285 HLA-DRB5Q30154 266 aa7.01□□□□□ -1.29
USP3-208ENST00000558285 C8orf31Q8N9H6 132 aa7.01□□□□□ -1.29
USP3-208ENST00000558285 MRGPRDQ8TDS7 321 aa7.01□□□□□ -1.29
USP3-208ENST00000558285 RXFP4Q8TDU9 374 aa7.01□□□□□ -1.29
USP3-208ENST00000558285 WFDC12Q8WWY7 111 aa7.01□□□□□ -1.29
USP3-208ENST00000558285 ARL11Q969Q4 196 aa7.01□□□□□ -1.29
USP3-208ENST00000558285 NKX3-1Q99801 234 aaPredicted RBP7.01□□□□□ -1.29
USP3-208ENST00000558285 GINS4Q9BRT9 223 aa7.01□□□□□ -1.29
USP3-208ENST00000558285 C2orf88Q9BSF0 95 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms