RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 COL8A2P25067 703 aa10.52□□□□□ -0.72
VIPAS39-206ENST00000553888 SWI5Q1ZZU3 235 aa10.52□□□□□ -0.72
VIPAS39-206ENST00000553888 TET2Q6N021 2002 aaPredicted RBP10.52□□□□□ -0.72
VIPAS39-206ENST00000553888 SEBOXQ9HB31 216 aaPredicted RBP10.52□□□□□ -0.72
VIPAS39-206ENST00000553888 OR6C3Q9NZP0 311 aa10.52□□□□□ -0.72
VIPAS39-206ENST00000553888 SLC25A10Q9UBX3 287 aaPredicted RBP10.52□□□□□ -0.72
VIPAS39-206ENST00000553888 SVEP1Q4LDE5 3571 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 IGSF23A1L1A6 192 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 F8W036 122 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 F2RL2O00254 374 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 CLDN1O95832 211 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 CCL3L1P16619 93 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 CAV2P51636 162 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 NCR3LG1Q68D85 454 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 BAP18Q8IXM2 172 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 ODF3L1Q8IXM7 274 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 ZNF295-AS1Q8N0V1 137 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 SPAG16Q8N0X2 631 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 FAM122AQ96E09 287 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 MS4A5Q9H3V2 200 aa10.52□□□□□ -0.73
VIPAS39-206ENST00000553888 TRGV10A0A0A0MS01 117 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 TRAV38-1A0A0B4J264 116 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 IGHV1-69-2A0A0G2JMI3 117 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 KBTBD11-OT1A0A1B0GTJ5 212 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 A0A1W2PPR1 153 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 CHST1O43916 411 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 SNAPINO95295 136 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 GPR12P47775 334 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 EFNB3Q15768 340 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 TRAT1Q6PIZ9 186 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 IL22RA2Q969J5 263 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 SPIN2AQ99865 258 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 SPIN2BQ9BPZ2 258 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 IFI27L2Q9H2X8 130 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 PLA2G2EQ9NZK7 142 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 CLN8Q9UBY8 286 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 JPT1Q9UK76 154 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 RFNGQ9Y644 331 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 AUP1Q9Y679 476 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 MALRD1Q5VYJ5 2156 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 FLNCQ14315 2725 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 CLEC18AA5D8T8 446 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 KIAA1324LA8MWY0 1029 aaPredicted RBP10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 HSBP1L1C9JCN9 74 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 FBXO24O75426 580 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 RRASP10301 218 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 TPT1P13693 172 aaKnown RBP10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 ID3Q02535 119 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 CT45A1Q5HYN5 189 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 CLEC18CQ8NCF0 446 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 CT45A3Q8NHU0 189 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 STOML3Q8TAV4 291 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 H1FXQ92522 213 aaKnown RBP10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 VPS13CQ709C8 3753 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 NKX6-3A6NJ46 265 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 M0R1X1 148 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 PITX3O75364 302 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 CST7O76096 145 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 IAPPP10997 89 aa10.51□□□□□ -0.73
VIPAS39-206ENST00000553888 DUXBA0A1W2PPF3 345 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 C19orf84I3L1E1 186 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 WRBO00258 174 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 YPEL1O60688 119 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 AKR1D1P51857 326 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 PAX9P55771 341 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 EWSR1Q01844 656 aaKnown RBP eCLIP10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 PRB3Q04118 309 aaPredicted RBP10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 SLC25A24Q6NUK1 477 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 YPEL2Q96QA6 119 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 REG4Q9BYZ8 158 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 DMRT1Q9Y5R6 373 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 UTP20O75691 2785 aaKnown RBP10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 TRBV23-1A0A0A0MS06 115 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 GPR137BO60478 399 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 WNT2P09544 360 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 P2RY1P47900 373 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 DLX1P56177 255 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 CLINT1Q14677 625 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 ESCO2Q56NI9 601 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 PDZD9Q8IXQ8 264 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 C1orf87Q8N0U7 546 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 OR2C3Q8N628 320 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 TMEM217Q8N7C4 229 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 PLEKHA2Q9HB19 425 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 FAM212BQ9NTI7 297 aaPredicted RBP10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 GFOD1Q9NXC2 390 aa10.5□□□□□ -0.73
VIPAS39-206ENST00000553888 DVL1O14640 695 aa10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 TNFRSF13BO14836 293 aaPredicted RBP10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 DUTP33316 252 aaKnown RBP10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 BMI1P35226 326 aa10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 RPL35P42766 123 aaKnown RBP10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 RPL31P62899 125 aaKnown RBP10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 SPINK9Q5DT21 86 aa10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 AVPI1Q5T686 147 aa10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 VKORC1L1Q8N0U8 176 aa10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 ITLN2Q8WWU7 325 aaPredicted RBP10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 TMEM204Q9BSN7 226 aa10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 ABHD14AQ9BUJ0 271 aa10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 RNF212BA8MTL3 300 aa10.49□□□□□ -0.73
VIPAS39-206ENST00000553888 I3L521 148 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms