RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 MDH2P40926 338 aaKnown RBP10.36□□□□□ -0.75
SHMT2-207ENST00000553837 WNT5AP41221 380 aa10.36□□□□□ -0.75
SHMT2-207ENST00000553837 LCN2P80188 198 aa10.36□□□□□ -0.75
SHMT2-207ENST00000553837 MEF2BQ02080 365 aaPredicted RBP10.36□□□□□ -0.75
SHMT2-207ENST00000553837 UBE2V1Q13404 147 aa10.36□□□□□ -0.75
SHMT2-207ENST00000553837 HES3Q5TGS1 186 aa10.36□□□□□ -0.75
SHMT2-207ENST00000553837 TMEM211Q6ICI0 200 aa10.36□□□□□ -0.75
SHMT2-207ENST00000553837 PINX1Q96BK5 328 aaKnown RBP10.36□□□□□ -0.75
SHMT2-207ENST00000553837 NUDT11Q96G61 164 aa10.36□□□□□ -0.75
SHMT2-207ENST00000553837 RSG1Q9BU20 258 aa10.36□□□□□ -0.75
SHMT2-207ENST00000553837 C12orf49Q9H741 205 aa10.36□□□□□ -0.75
SHMT2-207ENST00000553837 VSIRQ9H7M9 311 aa10.36□□□□□ -0.75
SHMT2-207ENST00000553837 FAM186AA6NE01 2351 aa10.36□□□□□ -0.75
SHMT2-207ENST00000553837 TNRC6AQ8NDV7 1962 aaKnown RBP10.35□□□□□ -0.75
SHMT2-207ENST00000553837 TMEM250H0YL14 139 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 CLEC12BQ2HXU8 276 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 CEACAM21Q3KPI0 293 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 TMEM41BQ5BJD5 291 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 MRPL21Q7Z2W9 205 aaKnown RBP10.35□□□□□ -0.75
SHMT2-207ENST00000553837 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-207ENST00000553837 ZNF488Q96MN9 340 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 GPHA2Q96T91 129 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 ELOVL1Q9BW60 279 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 DEFB127Q9H1M4 99 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 ABI3Q9P2A4 366 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 ZFHX4Q86UP3 3567 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 CBY3A6NI87 242 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 HSPB6O14558 160 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 TOMM40O96008 361 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 VASH2Q86V25 355 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 ZDHHC23Q8IYP9 409 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 IL22RA2Q969J5 263 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 APOBEC3DQ96AK3 386 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-207ENST00000553837 RPUSD4Q96CM3 377 aaKnown RBP10.35□□□□□ -0.75
SHMT2-207ENST00000553837 RAB40CQ96S21 281 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 VPS25Q9BRG1 176 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 SPRR3Q9UBC9 169 aa10.35□□□□□ -0.75
SHMT2-207ENST00000553837 SLC33A1O00400 549 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-207ENST00000553837 NXPH3O95157 252 aa10.34□□□□□ -0.75
SHMT2-207ENST00000553837 SCTP09683 121 aa10.34□□□□□ -0.75
SHMT2-207ENST00000553837 UCP1P25874 307 aa10.34□□□□□ -0.75
SHMT2-207ENST00000553837 PSMB3P49720 205 aa10.34□□□□□ -0.75
SHMT2-207ENST00000553837 RPS20P60866 119 aaKnown RBP10.34□□□□□ -0.75
SHMT2-207ENST00000553837 FGF12P61328 243 aa10.34□□□□□ -0.75
SHMT2-207ENST00000553837 RNF151Q2KHN1 245 aa10.34□□□□□ -0.75
SHMT2-207ENST00000553837 LHX4Q969G2 390 aa10.34□□□□□ -0.75
SHMT2-207ENST00000553837 SLC39A9Q9NUM3 307 aa10.34□□□□□ -0.75
SHMT2-207ENST00000553837 TRAPPC1Q9Y5R8 145 aa10.34□□□□□ -0.75
SHMT2-207ENST00000553837 PIGBOS1A0A0B4J2F0 54 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 IGKV1-6A0A0C4DH72 117 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 CD300LBA8K4G0 201 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 NAPSAO96009 420 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 C1orf185Q5T7R7 199 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 LINC01551Q86U37 167 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 OR5D13Q8NGL4 314 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 SDSLQ96GA7 329 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 LOXL4Q96JB6 756 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 TAAR3PQ9P1P4 343 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 PRRC2CQ9Y520 2896 aaKnown RBP10.33□□□□□ -0.76
SHMT2-207ENST00000553837 IGKV1D-13A0A0B4J2D9 117 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 WISP2O76076 250 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 VENTXO95231 258 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 IGKV1-13P0DP09 117 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 UBE2NP61088 152 aaKnown RBP10.33□□□□□ -0.76
SHMT2-207ENST00000553837 PAFAH1B2P68402 229 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 TMEM267Q0VDI3 215 aaPredicted RBP10.33□□□□□ -0.76
SHMT2-207ENST00000553837 RTP5Q14D33 572 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 TMEM183BQ1AE95 376 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 LRRC75BQ2VPJ9 315 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 C20orf204Q6ZNR8 217 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 TMPRSS7Q7RTY8 843 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 MYPOPQ86VE0 399 aaPredicted RBP10.33□□□□□ -0.76
SHMT2-207ENST00000553837 WDYHV1Q96HA8 205 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 PARLQ9H300 379 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 TMEM106BQ9NUM4 274 aa10.33□□□□□ -0.76
SHMT2-207ENST00000553837 PCNX2A6NKB5 2137 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 CNOT4O95628 575 aaKnown RBP10.32□□□□□ -0.76
SHMT2-207ENST00000553837 GYPAP02724 150 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 ARR3P36575 388 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 UBE2G2P60604 165 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 RPL15P61313 204 aaKnown RBP10.32□□□□□ -0.76
SHMT2-207ENST00000553837 RPL19P84098 196 aaKnown RBP10.32□□□□□ -0.76
SHMT2-207ENST00000553837 RNPS1Q15287 305 aaKnown RBP10.32□□□□□ -0.76
SHMT2-207ENST00000553837 PRSS8Q16651 343 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 SPATA46Q5T0L3 261 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 TOMM20LQ6UXN7 152 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 TEX43Q6ZNM6 134 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 ZNF818PQ6ZRF7 136 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 SAXO1Q8IYX7 474 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 LYG1Q8N1E2 194 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 GAPTQ8N292 157 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 TMEM256Q8N2U0 113 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 MRPL30Q8TCC3 161 aaKnown RBP10.32□□□□□ -0.76
SHMT2-207ENST00000553837 OR5P3Q8WZ94 311 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 SMIM12Q96EX1 92 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 PLK3Q9H4B4 646 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 KLF13Q9Y2Y9 288 aaPredicted RBP10.32□□□□□ -0.76
SHMT2-207ENST00000553837 ESPL1Q14674 2120 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 FAM90A10PA6NDY2 464 aa10.32□□□□□ -0.76
SHMT2-207ENST00000553837 FAM90A18PA6NE21 464 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms