RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 GON7Q9BXV9 100 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 DCSTAMPQ9H295 470 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 FBXL15Q9H469 300 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 SDHAF2Q9NX18 166 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 RHBDL2Q9NX52 303 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 WASHC3Q9Y3C0 194 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 NOTCH3Q9UM47 2321 aa8.04□□□□□ -1.12
CCDC88C-206ENST00000553437 TMEM235A6NFC5 223 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 G3V318 75 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 H7C2Y5 167 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 SCGNO76038 276 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 IGLV1-40P01703 118 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 IGKV1-16P04430 117 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 EGR2P11161 476 aaPredicted RBP8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 VDAC1P21796 283 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 PSMB8P28062 276 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 SLC6A1P30531 599 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 MYCNOSP40205 109 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 CDX1P47902 265 aaPredicted RBP8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 CRIP2P52943 208 aaPredicted RBP8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 PSG5Q15238 335 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 C19orf54Q5BKX5 351 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 CXorf66Q5JRM2 361 aaPredicted RBP8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 IDNKQ5T6J7 187 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 ZNF660Q6AZW8 331 aaPredicted RBP8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 ZNF695Q8IW36 515 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 MINDY2Q8NBR6 621 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 KLHL30-AS1Q8NEE0 82 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 NUDCD2Q8WVJ2 157 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 ISOC1Q96CN7 298 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 ST6GALNAC5Q9BVH7 336 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 OR2D2Q9H210 308 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 KLK15Q9H2R5 256 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 KIAA1456Q9P272 454 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 FBXO7Q9Y3I1 522 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 ETV7Q9Y603 341 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 WSB1Q9Y6I7 421 aa8.03□□□□□ -1.12
CCDC88C-206ENST00000553437 M0R1X1 148 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 AIREO43918 545 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 TMEM127O75204 238 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 PRB2P02812 416 aaPredicted RBP8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 OR5H8P0DN80 308 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 RPS19P39019 145 aaKnown RBP8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 CX3CL1P78423 397 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 PITPNAQ00169 270 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 TIMM50Q3ZCQ8 353 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 PDPNQ86YL7 162 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 RCC1LQ96I51 464 aaKnown RBP8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 RAX2Q96IS3 184 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 DUX3Q96PT4 197 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 GINS4Q9BRT9 223 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 PARP11Q9NR21 331 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 SPATA2Q9UM82 520 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 NUBP2Q9Y5Y2 271 aa8.02□□□□□ -1.13
CCDC88C-206ENST00000553437 TRAV18A0A075B6X5 111 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 A0A0A6YYH2 397 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 TRAV41A0A0B4J266 112 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 A6NJ64 397 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 NUDT19A8MXV4 375 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 SOX15O60248 233 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 SPDEFO95238 335 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 IGLV2-23P01705 113 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 APOA2P02652 100 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 CRYGBP07316 175 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 CTXN2P0C2S0 81 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 TMBIM6P55061 237 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 GNG2P59768 71 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 RPS16P62249 146 aaKnown RBP8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 SSBP2P81877 361 aaPredicted RBP8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 DCTN2Q13561 401 aaKnown RBP8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 CNIH2Q6PI25 160 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 ZNF562Q6V9R5 426 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 OR13F1Q8NGS4 319 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 DDB2Q92466 427 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 FLYWCH2Q96CP2 140 aaKnown RBP8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 TSNAXQ99598 290 aaKnown RBP8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 TPSG1Q9NRR2 321 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 SLC35D1Q9NTN3 355 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 NECAP2Q9NVZ3 263 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 METTL1Q9UBP6 276 aaKnown RBP8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 ANXA10Q9UJ72 324 aa8.01□□□□□ -1.13
CCDC88C-206ENST00000553437 IGKV1D-13A0A0B4J2D9 117 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 SRRM4A7MD48 611 aaKnown RBP8□□□□□ -1.13
CCDC88C-206ENST00000553437 LINC00473A8K010 186 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 CCL24O00175 119 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 TUSC2O75896 110 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 IGLV2-14P01704 120 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 HLA-DQB1P01920 261 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 IGKV1-13P0DP09 117 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 NFYAP23511 347 aaPredicted RBP8□□□□□ -1.13
CCDC88C-206ENST00000553437 DUTP33316 252 aaKnown RBP8□□□□□ -1.13
CCDC88C-206ENST00000553437 LGALS7P47929 136 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 LSM3P62310 102 aaKnown RBP8□□□□□ -1.13
CCDC88C-206ENST00000553437 PLGLAQ15195 96 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 DEFB136Q30KP8 78 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 TMEM177Q53S58 311 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 GPR107Q5VW38 600 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 REC114Q7Z4M0 266 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 CROCCP3Q8IVE0 287 aa8□□□□□ -1.13
CCDC88C-206ENST00000553437 GVQW1Q8N7I0 195 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms